KEGG   Achromobacter spanius: CVS48_18805Help
Entry
CVS48_18805       CDS       T05274                                 

Gene name
ligD
Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
asw  Achromobacter spanius
Pathway
asw03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:asw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CVS48_18805 (ligD)
Enzymes [BR:asw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CVS48_18805 (ligD)
DNA repair and recombination proteins [BR:asw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CVS48_18805 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AUA57883
UniProt: A0A2K8S604
LinkDB All DBs
Position
complement(4175036..4177639)
Genome map
AA seq 867 aa AA seqDB search
MADSLKTYRQKRNFKVTTEPAEGGQANESARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPCFDPSVKRMAVQVEDHPIAYNQFEGQIPEGQYGAGKVIIWDEGVWTPVADARKGYR
EGHLKFDLQGKKMQGRWALVRMKGKEGDKQPPWLLIKDRDAYARPEREFSVVDEMPDSVV
PLRDAKAVGKTKAKAKAATKSATAAATTPDTDTKASSTASKLPGRPADLPTSFKPQLATL
VDGLPPHAEDWLYELKFDGYRLLVRIEGESVKLYTRNGHDWSAKLPHIVQAFAKLPAKWA
WVDGEVVVLNDQGVPSFQALQNAFDNDRTGDIVFYAFDLPFIGCRDLREEPLTVRRDLLA
QLMDTADDDFLRFSEAFKETPSNLVASACKMGLEGIMAKRQSAPYVSRRSDSWLKIKCAK
RQEFVIVGYTAPQGAREGLGALLLAVHEDDGALRYAGKVGTGFDRQGLIALHKTLSGLET
DKKPVSGGQAKGVHWVKPELVAEVSFGEWTSGGHIRHSVFRGLRQDKPPSQITREKPAAA
SGSQAVSTDKPRAKSQVKSTNSPTTKPQATAPARAKPARLTHPERVIDPSTKLTKLDLAR
YYGLVAPLMLEHLKGRPVSFLRAPSGIDGQLFFQKHLEAAMPGVKSLPTRLDPDHPPLLE
VPTAEAIMSAVQMNVVEFHTWNAVKTAISKPDRMLFDLDPGEGVKWATMQQAARLVHTML
DELGLESWLKTSGGKGLHVVVPLRRQYDWDTLKSFAQTVVVHLARTLPQIFVAKSGPKNR
VGKIFADYLRNGFGATTVAAWSARARPGMGVSVPVAWDELDKLSSGAHWTISNIHERLDA
GNSPWDGYAPQAVGPAMDALDFKRGKS
NT seq 2604 nt NT seq  +upstreamnt  +downstreamnt
atggccgacagtcttaaaacctaccggcaaaagcgcaatttcaaggtgaccaccgaaccc
gccgagggcgggcaggccaacgagtccgcgcgcgctttcgtcatccagaagcactgggcc
agccggctgcactacgactttcgcctggagctggacggcgccatgaaaagttgggctgtg
cccaaggggccttgtttcgacccctcggtcaagcgcatggccgtacaggtggaagaccac
cccattgcctacaaccagttcgaaggccagattcccgaaggccaatacggcgcgggcaag
gtcatcatctgggacgaaggggtctggacacccgtggccgatgcgcgcaaaggctatcgc
gaggggcacctgaagttcgacctgcaaggcaagaagatgcagggccgatgggcgctggtg
cgcatgaagggcaaggaaggcgacaagcagccgccgtggctgctgatcaaggaccgcgac
gcctatgcgcgccccgaacgcgaattcagcgtggtggacgaaatgccggacagcgtggtg
ccgctgcgggatgcgaaggccgttggcaagacgaaggctaaagccaaggccgctacgaag
tccgctacagcggccgccactacgcccgataccgataccaaggcctcctccacagcaagc
aagctgcccggccggccggccgatctgcccacctcattcaagccccaacttgccacgctg
gtagacggcctgccgccgcacgcggaagactggctgtacgaactgaaattcgacggctac
cgcctgctggtgcgcatcgaaggggagtcggtcaagctgtacacccgcaacggccacgac
tggagcgccaagctgccgcatatcgtccaggcgtttgccaagctgcccgccaaatgggca
tgggtcgatggcgaggtggtcgtgctgaacgaccagggcgtgcccagtttccaggcgctg
caaaacgcttttgacaacgaccgcaccggcgatatcgtgttctacgcctttgacctgccg
tttatcggctgtcgggacctgcgcgaagaaccgctgaccgtgcggcgtgacctgctggcg
caattgatggacaccgccgacgacgactttctgcgctttagcgaagcgttcaaggaaacg
ccgtcgaacctggtggcgtcggcctgcaagatggggctggaaggcatcatggccaagcgc
cagtcggcgccgtatgtatcgcggcgcagcgatagctggctgaagatcaagtgcgccaag
cgacaagagttcgtcatcgtgggctataccgccccgcaaggtgcgcgcgaaggcctgggc
gccttgctgctggccgtgcatgaggacgacggcgccttgcgctatgcgggcaaggtcggc
accggctttgaccgccaggggttgattgcgctgcacaagactttatccggccttgaaacc
gacaagaagcccgtcagcggcgggcaggcgaaaggagtgcactgggtcaagccggaactg
gtggccgaggtgtcgttcggcgaatggaccagcggcgggcatatccgccattcggtcttt
cgcggcttgcgccaagacaaaccgcccagccagatcacacgggaaaagccggctgcggcg
tctggatcgcaggccgtgagcaccgacaagccgcgggccaagtcccaggtcaagtccacc
aactcgcccaccaccaagccccaggccacggcccccgcgcgcgccaaacccgcgcggctg
acgcaccccgagcgcgtcatcgatccgtcgaccaaactgaccaagctggatctggcgcgt
tattacggcctggttgcacctctgatgctggaacacctgaaaggccgccccgtatccttt
ctgcgcgcgccttccggcatcgacggccagctctttttccagaagcacctggaagccgcc
atgccgggcgtgaagtccttgcccacgcgcttggacccggatcatccgccgctgctggaa
gtgcccaccgccgaagccatcatgtcggccgtgcagatgaacgtggtggaattccatacc
tggaacgccgtgaaaacggccatctccaaacccgaccgcatgctgttcgacctggacccc
ggcgaaggcgtcaagtgggcgacgatgcagcaggctgcccgcctggtgcacaccatgctg
gatgaacttggcctggaatcctggctgaaaaccagtggtggcaagggcttgcatgtggtc
gtgccgctgcgccgtcaatacgattgggacacgctcaagtcctttgcgcagaccgtcgtg
gtgcatctggcccgcaccttgccgcagattttcgtggctaaaagcggccccaagaatcgc
gtgggcaagatctttgccgactatctgcgcaatggctttggcgcaacgacggtggccgcg
tggtcggcgcgggcgcggcccggcatgggcgtgtcggtgccggtggcgtgggacgaactc
gacaaactatccagcggcgcgcactggaccatcagcaatatccatgagcgtctggacgcg
ggcaactcaccctgggacggctatgcgccgcaagcggtggggccggccatggatgcgctg
gatttcaagcgtggcaagtcatga

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