Agrobacterium tumefaciens S33: AWN88_02590
Entry
AWN88_02590 CDS
T04213
Definition
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AWN88_02590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_02590
Enzymes [BR:
ata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AWN88_02590
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AWN88_02590
SSDB
Motif
Pfam:
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Other DBs
NCBI-ProteinID:
AMD57158
UniProt:
A0A0X8IV37
LinkDB
Position
circular:complement(567738..570230)
AA seq
830 aa
MGLQTYNAKRSFDKTPEPKGTKADVEGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEEKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGVWRPIGDARKSYRKGH
LEFELEGEKLRGRWHLVRMHGKPGEKRENWLLIKGDDDEARHDGGADILEERPESVKTGR
SVEDVASKPKDTWNSKPVSKKATASSSGRKQAHDLPRGARKQALPSFVLPALATLKPKPP
GGDRWLHEIKFDGYRLQVRLDHGKLQLLTRSGLDWTEKFGDAVARALKALPAETALIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGSDLRGAALTERKALLEKLLPA
GNPQLRYSEHFEESGALVLDHACRLSLEGVISKVKDSKYVSGRKGDWVKSKCSMRQEFVI
GGYTVSSTSDHAIGSLALGVYEKGKLRHVGRVGTGYTGEVAEMLLGRLKPLAQKESPFGE
KLTALARRDLHYVKPDLVAEVEFRAWSGDGNLRHASFRGLREDKPAQEIEREEKAVNDTR
PPQSAIQFTHPDRLYWPDDGVTKEGLADYYAQVWKQMAPFVVNRPLALLRCPEGIEGQRF
FQKHAWRGINKAIEQIRDPKDKAGEPLIRITDYDGMMALVQSAALEIHPWGATTASWEKP
DMITMDIDPAEDVSWEDVIEAALELKRRFEAAGLAAFVKTSGGKGLHVVAPLKPQAGWTA
VKAFAKAMAADMSKAEPDRYLSVATKAKRKGRIFIDYLRNGRGNTAVAPYSTRARPGAAV
SAPLEWSELTADIGPAHFTVNNIGARLSALKKDPWEGFFAAAEALPKKAR
NT seq
2493 nt
+upstream
nt +downstream
nt
atgggattgcagacctataacgccaaacgcagcttcgacaagacccctgagcccaaaggg
acgaaggccgacgtcgaaggctcgagcttcgtcatccagaaacatgatgcccgcaggctg
cattacgattttcgtctggaaatggatggggtgctgaagagctgggcggtcacgcgaggc
ccaagccttgatccggaagaaaagcgccttgccgtgcacgtggaagaccatccgctcagt
tatggcgatttcgagggtgtcatcccaaagggacaatatggtggcggaaccgtcatcgtt
tgggatcgcggcgtctggcggccgatcggcgacgccagaaagagctatcgaaaaggccat
ctcgaattcgagctggaaggcgagaagctgagaggccgctggcatctggtgcgtatgcac
ggaaagcctggcgaaaagcgggaaaactggctgctgatcaagggcgatgatgacgaggcg
cggcacgacggcggtgccgatattctggaagagcggccggaatcggtgaaaaccggtcgc
agcgtcgaagatgtcgcttcaaaaccgaaggacacgtggaattccaaaccggtgtcgaaa
aaggccacggcatcctcttcaggccggaagcaggcgcatgatttgcccaggggcgcgcgt
aaacaggcgcttccgtccttcgtgctgccggcgcttgccacgctgaagccgaaaccgcct
ggcggcgatcgctggctgcacgaaatcaagttcgacggataccgactgcaggtccggctc
gaccacggcaaactccagctccttacccgtagtggtctggactggacagagaaatttggg
gatgcggtggcccgcgcgttgaaggccttgcccgccgaaacagccctgatcgacggtgaa
atcgtcgtggaacgggacagcggcgcatccgacttttcagccctgcaacaggatttaagt
gaagggcgcagcgaccgtttcgtcttctacgccttcgatctcctgtatctcgatgggtcc
gacctgcgcggcgcagcgctcaccgaacgcaaggctctcctcgaaaaactccttccggcg
ggcaatccgcagctgcgttacagcgaacatttcgaggagagcggcgcgctggtccttgac
cacgcctgtcgtctcagcctcgaaggggtgatctccaaggtcaaggacagcaaatatgtc
tccggccgcaagggtgattgggtgaaatcgaaatgttcgatgcggcaggaattcgtcatc
ggtggttatacggtttcttccacttcggatcatgccatcggttcactggccctcggcgtc
tatgaaaagggcaagctgcgccatgtaggccgcgtcggtacgggttacaccggcgaggtg
gctgagatgctgctcggacgcctgaagccgctcgcgcaaaaggaaagccccttcggagaa
aagctgaccgcgcttgcacgtcgcgacctccactacgtcaaaccggacctcgtggcggag
gtcgaattccgggcgtggtcgggcgatggcaatctgcggcacgcctcattccgaggactg
cgcgaggataagcctgctcaagaaatcgaacgcgaggagaaggccgtgaacgacaccaga
ccgccgcagtctgccatccaattcactcacccggaccgcctttactggccggatgacggc
gtgacgaaggaaggtcttgccgattattatgcccaggtctggaagcagatggcgcccttc
gtggtcaacaggccgctggcgctgctgcgctgccccgagggtatagaagggcagcggttt
ttccagaaacacgcctggcgcggcatcaacaaggccatcgaacagatcagggatcccaag
gacaaggccggcgaaccactgatccgcatcaccgattatgacggcatgatggcgctcgtg
cagtctgcggcgcttgaaatccacccatggggagcgaccaccgcgagctgggaaaagccg
gatatgatcaccatggatatcgatcccgccgaggatgtctcctgggaggatgtgatagag
gcggcgctcgaactgaagcggcgttttgaagcggcgggtctggcagctttcgtcaagaca
tcaggcggcaaggggcttcatgtggttgcccccctgaagccgcaggcgggctggacggca
gtcaaggcatttgccaaagccatggccgcagacatgtcgaaggccgagccggacaggtat
ctctcggtcgcaaccaaggcaaaacgcaaaggccgcattttcatcgactatctgcgcaac
ggtcgcggcaataccgcggtggcgccttattcgacccgggcgcggccgggtgcggcggtc
tccgcccccctcgaatggtccgaactcacggccgatatcggtcctgcccacttcacggtc
aacaatatcggggcacgtctttccgcattgaagaaagatccctgggagggcttttttgcc
gccgcggaggctttgccgaaaaaggcgcgctaa
DBGET
integrated database retrieval system
