KEGG   Agrobacterium tumefaciens Ach5: Ach5_43430Help
Entry
Ach5_43430        CDS       T03816                                 

Gene name
ligD
Definition
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
atf  Agrobacterium tumefaciens Ach5
Pathway
atf03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:atf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Ach5_43430 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atf03400]
    Ach5_43430 (ligD)
Enzymes [BR:atf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Ach5_43430 (ligD)
DNA repair and recombination proteins [BR:atf03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Ach5_43430 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID: AKC10116
LinkDB All DBs
Position
linear:1829709..1832201
Genome map
AA seq 830 aa AA seqDB search
MGLQSYNAKRSFDKTPEPKGDKVDAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVILWDRGVWRPIGDAKKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHDGGADILEERPESVKTGR
SVEEVAAKPKDTWNSKPVSKKTVSSSSGQKQAHALPKGARKQALPSFVPPALATLKPKPP
EGSRWLHEIKFDGYRLQVRIDHGKLQLLTRSGLDWTEKFGDAVARALKSLPVETLMIDGE
IVVERDSGASDFSALQQDLSEGRSDRFVFYAFDLLYLDGTDLRGAALTDRKALLEKLLPA
SNPHLRYSEHFEESGGLVLDHACRLSLEGVVSKVKDSKYVSGRKGNWVKSKCSMRQEFVI
GGYTLSSASDNAIGSLALGVYEEGKLRHVGRVGTGYTADIAEMLLGRLKPLGIDDSPFGE
KLTALARRDLHFVKSELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREDKAVSEQG
TPQSKIKFTHPERLYWPDDGVTKEGLADYYTQVWRYMAPFVVNRPLALLRCPEGIDGQRF
FQKHAWRGVNKAIEQIKDPKDKGGEPLIRITDFDGMMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVSWQEVIDAALELKRRFEDAGLAAFVKTSGGKGLHVVAPLKPEAGWPA
LKAFAKTMADDMAKAESEKYLAVATKAKRQGRIFLDYLRNGRGNTAVAPYSTRARPGAAI
SAPIEWAELSDEIGPAHFTVSNIGARLSALKKDPWDGFFAAARPLPKKAR
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
atgggtttgcagagctataacgccaagcgcagtttcgacaagacgccggagccgaagggc
gacaaggtcgatgcgcagggatcgagtttcgtcatacagaagcacgatgcccgccgactg
cattacgatttccggctggagatggacggcgtccttaaaagctgggcggtaacccgcggg
ccgagccttgacccggaggacaagcgccttgcggtccacgtcgaggaccaccctctaagc
tacggcgacttcgaaggcgtaatcccgaaaggtcaatatggcggcggcaccgtcattctt
tgggatcgtggtgtctggcgcccgattggcgacgcgaagaaaggctaccgcaaaggccat
ctcgaattcgaactggagggcgaaaagcttaaaggccgctggcatcttgtacgtatgcat
ggaaagcccggtgaaagccgtgaaaactggctgctgatcaagggcgacgacgaagaggca
aggcatgatggcggcgccgatattctggaggagcggccggaatccgtgaagactggccga
agtgttgaagaagttgccgccaagccgaaagacacctggaattcgaagcccgtatcgaaa
aagaccgttagttcctcctcgggccaaaaacaggcgcatgcccttccgaaaggtgcccgc
aaacaggcgctgccatccttcgtgccgccggcacttgcgacgctgaaacccaagccaccg
gaaggctcccgctggctgcatgagatcaagttcgacggctatcgcctgcaggtccgtatc
gaccacggcaaactccagcttctgacccgtagcggactggactggaccgaaaagttcggc
gatgccgtggctcgagcgctcaagtcgctgccggtcgaaacactgatgatcgacggcgaa
atcgtggtggaacgggacagcggcgcctcggatttctctgccttgcaacaggacttgagc
gaagggcgcagcgaccgcttcgttttttatgcctttgatctcctttatctggatggcacg
gatttgcgcggggcggcgctgacggatcgcaaggcgctactggaaaagctgctgcccgcc
agcaacccgcatcttcgctacagcgaacatttcgaggaaagcggcgggcttgttctcgat
catgcctgccgcctcagcctcgagggcgttgtctccaaggtcaaggacagcaaatacgtc
tctggccgcaagggtaactgggtgaaatccaagtgctcgatgcgacaggagttcgtcatc
ggcggctatacgctttcctccgcgtcggacaatgccatcggctcactggcgctcggcgtt
tatgaggaaggcaagctgcgtcatgtcggccgagtcggcaccggctataccgctgacatt
gccgaaatgctgcttggccgcctgaaaccgctgggcatcgatgatagccctttcggcgaa
aagctcacggcacttgcgcgccgcgacctgcatttcgtcaagtcggaactggttgcagaa
gtggagtttcgcgcctggtccggagatggcaatctgcgccatgcatcattccgcggcttg
cgggaagacaagccggcgggcgaaatcgaacgcgaggataaagccgtgtcggaacaaggg
acgccgcagtcaaagatcaagttcacccatccggaacggctttattggccggacgatggc
gtgaccaaggaagggcttgccgattattacacgcaggtctggcgctatatggcccccttt
gtcgtcaaccggcctctggcgctgctgcgttgtcctgaagggatcgatggtcagcgtttc
ttccagaaacacgcctggcgcggtgtgaacaaggcgatagaacagatcaaggatccgaag
gacaagggcggcgaaccgcttatcaggattacggatttcgatggcatgatggccctggtc
cagtccgctgcgcttgaaattcacccatggggggcgacaaccgcgaactgggaaaagcct
gacatgatcaccatggatatagaccccggcgaggacgtgtcatggcaggaggtaatcgat
gcggcactggaactgaagcggcgtttcgaagatgccggtctggccgctttcgtgaaaacc
tccggcggcaaggggttgcatgtcgtggcacctttgaaaccggaagcgggatggccggcc
ttgaaggcctttgcaaagaccatggcggatgacatggccaaggcggagtcggagaaatat
cttgcggtggcaaccaaagcgaaacgccagggtcgcatcttcctcgactatctgcgtaat
ggcaggggcaatacggctgttgcgccctattcgacacgtgcccgaccgggagccgccatt
tcagcgccaatcgaatgggcggaactctcagatgagataggtccggcacacttcacggtc
agcaatatcggcgcgcgcctttctgccctgaagaaggatccatgggacggctttttcgct
gccgcgcgacccctgccgaaaaaggcccgataa

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