KEGG   Arabidopsis thaliana (thale cress): AT1G20010Help
Entry
AT1G20010         CDS       T00041                                 

Gene name
TUB5
Definition
(RefSeq) tubulin beta-5 chain
  KO
K07375  tubulin beta
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04145  Phagosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    AT1G20010 (TUB5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT1G20010 (TUB5)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ath04812]
    AT1G20010 (TUB5)
   04147 Exosome [BR:ath04147]
    AT1G20010 (TUB5)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic Type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     AT1G20010 (TUB5)
Cytoskeleton proteins [BR:ath04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    AT1G20010 (TUB5)
Exosome [BR:ath04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   AT1G20010 (TUB5)
  Exosomal proteins of colorectal cancer cells
   AT1G20010 (TUB5)
  Exosomal proteins of bladder cancer cells
   AT1G20010 (TUB5)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_3 Tubulin_2
Motif
Other DBs
NCBI-GeneID: 838590
NCBI-ProteinID: NP_564101
MIPS: AT1G20010.1
TAIR: AT1G20010
Araport: AT1G20010
UniProt: P29513 A0A178W9M8
LinkDB All DBs
Position
1
AA seq 449 aa AA seqDB search
MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGRY
VPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDV
VRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTV
VEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVTCS
LRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDSKNM
MCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPNNVKSSVCDIPPK
GLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
AEYQQYQDATADEEGEYDVEEEEEGDYET
NT seq 1350 nt NT seq  +upstreamnt  +downstreamnt
atgagagagatccttcacattcaaggtggtcaatgcggtaaccagattggttccaagttc
tgggaagtcatctgcgacgagcacggcatcgattccaccggacgttacagtggagacact
gcagatctccagcttgaacgtatcaatgtctattacaatgaagcttcaggtggaagatac
gttcctcgtgctgttcttatggatcttgagcctggtactatggatagtatcagatccgga
ccgtttggtcagatcttccgtcctgataactttgtctttggtcagtctggtgctggtaat
aattgggctaaaggtcattacactgaaggtgctgaacttattgatgctgttcttgatgtt
gttcgtaaagaagctgagaactgcgattgccttcaagggtttcaggtgtgccattcgttg
ggaggaggcacaggttcaggaatgggaacactattgatatcgaagatccgagaggagtat
ccagacagaatgatgctcactttctctgttttcccatctcctaaagtctctgacacagtc
gttgagccttacaatgcaactctctctgtccatcagcttgtagagaacgctgatgaatgc
atggtcctcgacaatgaagctctctacgatatctgcttccgtaccctcaaactcagcact
cctagctttggagacttgaaccatttgatctccgcaacaatgagcggtgtgacttgctcc
ttaaggttccccggacaactaaactctgacctcaggaaactcgcggtgaacctaatccca
ttccctcgtctccatttcttcatggtgggttttgcgcccctcacttcccgtggctcgcaa
caatacatctcactcaccgttcctgagctgactcaacaaatgtgggactccaaaaacatg
atgtgtgcagctgatccacgtcacggacgttacctcacagcctctgctattttcagagga
cagatgagcacaaaagaagtcgacgagcaaatcctaaacatacagaacaagaactcgtct
tacttcgttgagtggatcccaaacaacgtgaaatccagcgtttgtgatatcccaccaaag
gggctcaaaatggcggcgacgtttgtgggtaactcgacgtcgattcaagaaatgttcagg
agagtgagtgagcagttcacggctatgtttaggcgtaaagcgtttctgcattggtacaca
ggagaaggaatggacgaaatggagtttacggaagctgagagcaatatgaatgatttggtc
gctgaataccaacagtaccaagatgctactgctgatgaggaaggtgagtatgatgttgaa
gaagaagaggagggagattatgagacttga

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