Arabidopsis thaliana (thale cress): AT5G10370
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Entry
AT5G10370 CDS
T00041
Name
(RefSeq) helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT5G10370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ath03041
]
AT5G10370
Spliceosome [BR:
ath03041
]
Complex C
Other components
Step II factors
AT5G10370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
IBR
OB_NTP_bind
DEAD
AAA_22
AAA_19
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
SLS
zf-RING_2
zf-RING_5
ABC_tran
Helicase_RecD
ResIII
HA2_N
AAA_29
KH_1
AAA_30
AAA_16
nSTAND3
RsgA_GTPase
PhoH
Motif
Other DBs
NCBI-GeneID:
830901
NCBI-ProteinID:
NP_196599
TAIR:
AT5G10370
UniProt:
F4KGU4
LinkDB
All DBs
Position
5:3261149..3267399
Genome browser
AA seq
1775 aa
AA seq
DB search
MRNSFPPSDGGRSATDRRQQSSHSSSTNRYNSRSAQSSPPLNHRPTWNQQHSQYPNSNFP
PNYRRDRNPSSGYSPPVTRARPNFIVQLLHPAAANSDTKLCFSTKKQEIESLALLCEIPE
ESIHVPQFGCIAGSFSFRQWVDARSAVVALWDYRLQGKHEFVPELIPNVIVPSDMNELKD
RLRDLFSSHILSLMENGEGVKKVRLEIEEKSRQVVSFSSKRGLKFEVFEKKKAIEAERDL
VVNRLEEFNNAMKSILRYLIGQDGYEFDLDDEEEGDVAVFCLEGAYDWRRIHCLIRRECR
RLEDGLPIYAYRRQILKKIHREQIMVLIGETGSGKSTQLVQFLADSGVAASESIVCTQPR
KIAAMTLADRVREESSGCYEENTVSCTPTFSSTEEISSKVVYMTDNCLLQHYMKDRSLSG
ISCVIIDEAHERSLNTDLLLALLKKLLSRRIDLRLVIMSATADAKQLSQYFFSCGILLVN
GRNFPVEIVYSPSDTEENSVVGGIASYVGDVVKMAVEIHKTEKEGTILAFLTSQAEVEWA
CERFITPSAIALPLHGKLSFEEQFRVFQNHPGRRKVIFATNIAETSLTIPGVKYVIDSGM
VKESKYEPRTGMSILKVCRVSQSSARQRAGRAGRTEPGRCYRLYSKNDFDSMNLNQEPEI
RRVHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQEG
HCLVKLGLEPKLGKLILGCFRHRMGKEGIVLAAVMANASSIFCRVGNFDDKMKADRLKVQ
FCNQNGDLFTLLSVYKEWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIERELTL
VSPSYWVWNPNEGTKHDKHLKMVILASLAENVAMYTGYNQLGYEVALTGQQVQLHPSCSL
LAFGQKPSWVVFGELLSIVDQYLVCVTACDFEALYMLDPPPPFDVSQMDERRLRIKKVVG
CSSTVLKRFCGKSNRSLLSIVSRARSLCSDERIGIQVDVDQNEIRLYAPPLDMEKVSALV
NDALECEKKWMHNECLEKYLYHGRGQVPIALFGSGAQIKHLEVDQRFLTVDVLYYGDDVV
DDRELLTFLEKKIDGSICSIYKFAANKQDCDEKEKWGRITFLTPESAMKATEIQKFYFKG
SVLKLFPSLSTGGGIFKMPYFSSVTAKIRWPRRESSGRGCLKCPSGDIHRILGDISSLEI
GTNYVHIQRDQQSNDSILISGLGDLSEAEVLDVLEFRTQRRDLNFFIFRKKYSVQCPSPT
ACEEELHKRIFARMSAKNPEPNCVQVQVFEPKEDNYFMRALIKFDGRLHFEAAKALQELN
GEVLPGCLPWQKIKCEQLFQSSIICSASIYNTVKRQLNVLLARFERQKGGECCLEPTHNG
AYRVKITAYATRPVAEMRRELEELLRGRPINHPGFTRRVLQHLMSRDGINLMRKIQQETE
TYILLDRHNLTVRICGTSEKIAKAEQELIQALMDYHESKQLEIHLRGPEIRPDLMKEVVK
RFGPELQGIKEKVHGVDLKLNTRYHVIQVHGSKEMRQEVQKMVNELAREKSALGEKPDEI
EVECPICLSEVDDGYSLEGCSHLFCKACLLEQFEASMRNFDAFPILCSHIDCGAPIVLAD
MRALLSQEKLDELFSASLSSFVTSSDGKFRFCSTPDCPSVYRVAGPQESGEPFICGACHS
EICTRCHLEYHPLITCERYKKFKENPDLSLKDWAKGKNVKECPICKSTIEKTDGCNHMKC
RCGKHICWTCLDVFTQEEPCYAHLRTIHGGIGLVE
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgaggaactcttttcctccttcagacggtggaagatcggcgactgatcgtcgtcagcag
tcgtctcactcatcctccacgaaccgttataactctcgctctgcacaatcttctccgccg
ctcaaccaccgtcctacttggaaccagcaacactctcagtaccctaactcaaatttcccg
ccaaattacaggcgtgatcgtaatccgtcgtcgggatactcgcctccagttacgcgggct
agacctaatttcatcgttcagctgcttcaccccgccgccgctaacagtgacacaaagctg
tgtttttcgactaagaaacaagagatcgagagtctcgctttgctttgcgaaattcctgag
gaatcaattcatgtgcctcaatttggttgtatcgctggaagtttcagttttcgtcagtgg
gtcgatgcgcgctctgccgtggtggctctttgggattatcgacttcaagggaagcatgag
tttgttcctgagctgatccctaatgttattgttccgtctgacatgaacgagcttaaagac
aggcttcgtgatcttttctcgtctcatattctttcgcttatggaaaatggagaaggcgtc
aagaaggtgaggttggagattgaggagaagtctcgtcaagttgtgtccttttcgtctaaa
aggggtcttaaatttgaggtttttgagaaaaagaaggctatagaggctgagagagatttg
gttgtgaatcggcttgaagaattcaataatgccatgaagagcattttgcgatatctcata
ggacaagacgggtatgagtttgatttagatgatgaagaagaaggagacgtggccgtgttt
tgtttggaaggggcttatgattggagacgtattcattgtttgattcgtagggagtgtcga
aggctagaggatggacttcctatctatgcctaccggcggcagattttgaagaaaattcat
cgtgaacagataatggtgttgattggagaaactggttcagggaagagcactcagttagtt
cagttccttgctgattccggagttgctgctagtgagtcgattgtttgtacacaaccacgg
aagattgctgccatgacattggctgatcgggtcagagaagaaagcagtggttgttatgag
gaaaatactgtttcttgtactccaactttttcgtctactgaggagattagttccaaagtt
gtatacatgacggataattgtctgcttcagcactacatgaaagatcggagtttgtctggc
atttcatgtgttattattgacgaagctcatgaaagaagcttaaacacggaccttctgttg
gcattgcttaaaaagttgctatccagaaggattgacctgaggcttgtaatcatgtctgcc
acggccgatgccaaacaactttcacagtatttcttcagttgtggtattcttcttgtcaat
gggaggaactttccggtggagattgtatattcccctagtgacacagaagagaattctgtt
gttggcggcattgcttcatatgttggcgatgttgttaaaatggcagtggaaatacataaa
acagagaaagaaggaaccatccttgcattcttgacttcccaagcagaggtagaatgggca
tgcgaaaggtttataactccgtctgcaattgctttgcctttgcatggaaagctttccttc
gaagaacagtttagggttttccagaaccatcctgggagacggaaagtgatatttgccaca
aatattgcagagacgtcgctgactattcctggtgtcaagtatgtaattgattccgggatg
gtgaaagagagtaaatatgaacctagaacggggatgagcatcctcaaggtgtgccgggtc
agtcagagttctgctcgacaacgtgctggtcgtgctggaaggacagaacccggaagatgt
tacagactctactcaaaaaacgattttgattcaatgaatcttaatcaggaaccagaaatt
cggagggtccatcttggtgtagcacttttgaggatgcttgctctgggtgtcaacaacata
gcagaatttaactttgttgatgcgcctgtcccggaagccattgcaatggctgtccaaaat
cttgttcagttgggtgcagttgttgagaagaacggtgttcatgaattaacacaggaaggg
cattgtttagtcaagctggggctggagccaaagcttggaaagttaattttaggctgcttc
agacacagaatgggcaaagaggggattgttcttgctgctgtcatggctaatgctagtagt
atattttgcagagttggcaacttcgatgataagatgaaagctgatcgcctaaaggtgcaa
ttctgcaatcagaatggagacttgttcactcttctttcggtgtacaaagaatgggcatct
ctgccgcgagagagaagaaataaatggtgctgggaaaatagcctgaatgccaaatcaatg
aggagatgtgaagacacagtcaaggaattggagatatgcattgagagagaacttactctt
gtcagtcctagttactgggtttggaatccaaatgagggtactaaacacgacaagcatttg
aaaatggttatacttgcatctcttgcagaaaacgtggcgatgtacactggctataatcag
cttggatacgaggtggcattgactggtcaacaagttcagttacatccatcgtgttcattg
ctagcatttggccagaagccaagctgggttgttttcggtgaacttctatctattgtggac
cagtacttggtatgtgtaactgcgtgtgattttgaagctttgtatatgcttgatccacca
ccaccttttgacgtatcccagatggatgagcggaggctccgaattaaaaaagtggttggt
tgtagcagcactgtgctaaaacgattctgtgggaaatctaatcgtagtctgctttcaatt
gtttctcgtgctaggtctctttgttcggatgaaaggattggtattcaagtcgatgttgat
cagaatgagattcgactgtatgcgcctcccctcgacatggaaaaagtgtcagcccttgtg
aacgatgcattggaatgtgaaaagaaatggatgcataatgaatgtttggagaagtatcta
tatcatggtcggggacaagtacctattgcactgtttggatctggtgctcagataaagcat
cttgaagttgatcagagatttctgacagtcgatgtactttattatggcgatgatgttgtt
gatgacagagagcttctgacgtttctggagaagaagattgatgggtctatttgctctata
tacaagtttgctgcgaacaagcaagactgtgatgagaaggagaagtggggtagaataacc
tttctcactccagaatctgctatgaaggcaacagaaattcagaaattttatttcaaagga
tcagtgctcaaattatttccatcactgtcaactggtggaggaattttcaagatgccttat
ttctcttccgtgacagctaagattcgttggccgagaagggaaagcagtggtagaggatgt
cttaagtgcccttccggagatattcaccgtatacttggtgatatatccagccttgagata
ggaacaaattatgtccatattcagagagatcaacagtcaaatgattctatcttgataagt
ggacttggagatctttcggaagcagaagttttagatgttttggaattcagaacgcagaga
agagatctgaattttttcatattcagaaaaaaatacagtgtgcagtgcccatctcctact
gcttgcgaagaagagcttcataagagaatatttgcgcgcatgtcagcaaagaatccagag
ccaaactgtgtccaagttcaagtttttgaaccaaaagaagacaattacttcatgcgagcg
ttaattaagtttgacgggagattacatttcgaagctgcaaaagctttgcaagagttaaat
ggggaggtgctacctggatgtcttccatggcagaagataaagtgcgaacaattgtttcag
agctccataatctgctccgcttctatctacaacactgtcaaaagacaattgaacgtttta
ttagcaaggtttgagagacaaaaagggggtgaatgctgtctggaaccaactcataacggg
gcttatcgtgttaaaattactgcttatgcaacaagacccgttgcggagatgcggagagaa
cttgaagaactcttaagaggaagacccataaaccatccaggcttcacacgtagagtcctg
cagcatcttatgtccagagatggtattaatctgatgcggaagatccagcaggagacagaa
acttacattctattagataggcacaatctcacagtacgcatttgtggaacaagtgagaaa
attgccaaggcagaacaagaactgattcaggcacttatggattatcatgagagcaagcaa
cttgaaatccacctccgaggtcctgagatccgtcctgacctcatgaaggaagttgtgaag
cggtttggtccggagctccaaggtatcaaagaaaaggtgcatggtgtggatctcaagctc
aacacccggtaccatgttattcaggttcatgggagcaaagaaatgaggcaggaagtacaa
aagatggtcaatgaacttgcacgagaaaagagtgcactgggtgaaaaaccagatgagatt
gaagttgaatgccccatttgcttgtctgaagttgatgatggctactctcttgaaggatgt
tcacacctcttctgcaaagcttgtttgttggagcaatttgaggcatcgatgagaaacttt
gacgcattcccaatactttgttctcacatagactgtggagctccaatagtactcgctgat
atgagagccctcttatcacaagagaagctcgatgaactcttcagcgcatccttgtcctct
tttgtaacatccagtgatggaaagttcaggttttgctccacacctgattgcccttccgtc
taccgtgtagctggacctcaagaatctggtgagccattcatctgtggagcatgtcactca
gaaatatgcacaaggtgtcacctcgagtatcacccgttaatcacttgtgaaaggtacaaa
aagttcaaggaaaatccggacttgtcgctaaaggactgggcaaaagggaagaacgtaaag
gagtgtccgatttgcaagtcgacgatagagaagactgatgggtgtaaccatatgaagtgc
cggtgtggaaagcacatttgttggacctgcttagacgtcttcactcaagaagaaccttgt
tatgcccatttaaggacaattcatggtggaatcggattagtcgagtaa
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