KEGG   Arabidopsis thaliana (thale cress): AT5G12250Help
Entry
AT5G12250         CDS       T00041                                 

Gene name
TUB6
Definition
(RefSeq) beta-6 tubulin
  KO
K07375  tubulin beta
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath04145  Phagosome
Brite
KEGG Orthology (KO) [BR:ath00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    AT5G12250 (TUB6)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ath03036]
    AT5G12250 (TUB6)
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ath04812]
    AT5G12250 (TUB6)
   04147 Exosome [BR:ath04147]
    AT5G12250 (TUB6)
Chromosome and associated proteins [BR:ath03036]
 Eukaryotic Type
  Centrosome formation and ciliogenesis proteins
   Microtubules and associated factors
    Other tubulins
     AT5G12250 (TUB6)
Cytoskeleton proteins [BR:ath04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulins
    AT5G12250 (TUB6)
Exosome [BR:ath04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   AT5G12250 (TUB6)
  Exosomal proteins of colorectal cancer cells
   AT5G12250 (TUB6)
  Exosomal proteins of bladder cancer cells
   AT5G12250 (TUB6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Tubulin Tubulin_C Misat_Tub_SegII Tubulin_2 Tubulin_3 Astro_capsid_p
Motif
Other DBs
NCBI-GeneID: 831100
NCBI-ProteinID: NP_196786
MIPS: AT5G12250.1
TAIR: AT5G12250
Araport: AT5G12250
UniProt: P29514 A0A178UPR2
LinkDB All DBs
Position
5
AA seq 449 aa AA seqDB search
MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGRYV
PRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVV
RKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVV
EPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCL
RFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMM
CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIAPRG
LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVS
EYQQYQDATADDEGEYEEDEDEEEILDHE
NT seq 1350 nt NT seq  +upstreamnt  +downstreamnt
atgagagaaatccttcacattcaaggtggtcaatgtgggaaccagattggttccaagttc
tgggaagttgtatgtgatgagcatggtattgatcccactggtcgttacgttggaaactct
gatctgcagttggagcgtgtcaatgtttactataacgaggcatcctgcggaagatatgtt
ccccgtgcaattctcatggatcttgagcctggtactatggacagtgtcagaactggacct
tatggtcaaatcttcaggcctgacaactttgttttcgggcaatctggtgctggaaacaac
tgggctaaagggcattacactgaaggagctgagcttattgatgctgtactcgatgttgta
cgcaaagaggctgagaattgcgactgtcttcaaggtttccaagtatgtcactcacttggt
ggaggcaccgggtctggaatgggaactctgctcatatctaagatcagggaagagtatcct
gatagaatgatgcttacattttctgtcttcccatcaccaaaggtctctgacacagtggtt
gagccatacaatgcgacactttcagttcatcagctggtggaaaatgctgatgagtgtatg
gttttggacaatgaagccctttacgacatctgttttagaacacttaagcttaccactcct
agctttggtgatctgaatcatcttatctctgcaaccatgagtggagttacatgctgtctt
aggttcccgggtcagctcaactctgatctgaggaagctcgcagtgaacctcattcctttc
cctcgtctccactttttcatggttggttttgcccctctcacctcccgtgggtctcagcag
taccgtgcactcactgtccctgagctgacccaacagatgtgggattcaaagaacatgatg
tgcgcagcagacccgcgccacgggcggtacctaactgcctcggccatgttccgtggcaag
atgagcacaaaagaagtggacgagcagatgataaacgtacagaacaaaaactcttcctac
tttgtggaatggattccaaacaacgtgaagtcaagcgtctgtgacatagctccccgaggt
ctctcaatggcatcgacatttattgggaattccacatcgatccaagagatgtttaggcgg
gtgagcgagcagttcactgctatgttcaggaggaaagctttcttgcattggtacacaggt
gaaggaatggacgagatggagtttactgaagctgagagcaacatgaacgatctagtctca
gagtaccagcaataccaagacgcaactgcagatgacgaaggcgagtatgaagaagacgag
gatgaagaagagatattggatcatgagtga

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