KEGG   Amborella trichopoda: 18428563Help
Entry
18428563          CDS       T02990                                 

Definition
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
atr  Amborella trichopoda
Pathway
atr03030  DNA replication
atr03410  Base excision repair
atr03420  Nucleotide excision repair
atr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    18428563
   03410 Base excision repair
    18428563
   03420 Nucleotide excision repair
    18428563
   03430 Mismatch repair
    18428563
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:atr03032]
    18428563
   03400 DNA repair and recombination proteins [BR:atr03400]
    18428563
Enzymes [BR:atr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     18428563
    6.5.1.6  DNA ligase (ATP or NAD+)
     18428563
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     18428563
DNA replication proteins [BR:atr03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    18428563
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     18428563
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     18428563
   NER (nucleotide excision repair)
    Other NER factors
     18428563
   MMR (mismatch excision repair)
    Other MMR factors
     18428563
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Motif
Other DBs
NCBI-GeneID: 18428563
NCBI-ProteinID: XP_006837932
LinkDB All DBs
Position
Unknown
AA seq 726 aa AA seqDB search
MRIRAFLSPPASFQACKFPLNSKPPFSLSFMSTRTINDVLMAGARAAKDKKGRPPLKHTA
IENAKKEVASKEQEPSVETEEFNLDDKISELLKKAIDFKPERAAFWKSGERVPFILLARA
LDLIANESGRIAITEILCNVFRTVIATTPDDLIHVVYLAANKIAPAHEGVELGIGDASII
KALALSYGMKDETVKKQFNKLGDLGLVAKSNRSTQRLMVKVTPLTVVKVLEKFRIIAKQS
GKRSQDAKQGTIQELLVCATDCEPQYLVRLLQTKMRIGLAEQTVLVALGHAMVYSEVPPV
PSSQIQSRLEEASKIVKQVYSVAPIYDKIVSALLSAGVRKLSDTCCFTLGVPVGPMLAKP
TKGVSEILDKFQDTEFTCEYKYDGERAQIHYLDNGSVEIYSRNAERNTGKFPDVVDSVSR
FKKPSVTSFVLDCEVVAYDRQKQKILPFQVLSGRARKGVTLSEIKVSVCIFSFDILYLNG
RQLLQEQLKVRRELLYDSFQEVEGEFQFATAITSDDLEEIQKFLDNAINQSCEGLIIKTL
DRDATYEPAKRSNNWLKLKKDYMDSVGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDEHN
EEYQSICKIGTGFSEAMLEERSASLRDKVISAPKSYYRYGDTLNPDVWFEPAEVWEVKAA
DLSISPVHRAASGVIDPNKGISLRFPRLLRVREDKNPDQATCSEQVGEMYLAQKINHSGN
QDEDED
NT seq 2181 nt NT seq  +upstreamnt  +downstreamnt
atgagaattagggcttttctctctcccccagcatccttccaggcctgcaaattccccttg
aactcgaaaccccccttttctctttccttcatgtccactcgcacgatcaacgatgtcctg
atggctggtgcacgcgcagccaaggacaagaaaggtcgacctccattaaagcacacagct
attgaaaacgccaaaaaggaagtggcctcaaaagaacaagaaccctctgtggaaactgaa
gaattcaatttagatgacaaaatttcagagctcttaaagaaagccattgatttcaagcca
gagagagctgctttttggaagagtggagagagagtcccttttattttacttgcccgggct
ctcgatttgatagcgaatgagtcagggagaatcgccattactgagattctttgcaatgtt
tttagaactgtgattgctacgacccctgatgacctaattcatgtggtttatttggctgct
aacaagattgctcctgctcatgaaggagtggagcttggaattggagatgcttccatcatc
aaggctcttgctctgtcttatgggatgaaggatgagacagtcaagaaacagttcaataaa
ttgggtgatttaggccttgttgcgaagtcaaatcggtcaacccaacgattgatggtgaag
gtcactccacttacagtggtcaaggttttggagaaatttcgtatcattgccaagcaatcg
ggtaagcgaagccaagatgcgaagcaagggacaattcaagaacttcttgtgtgtgcaact
gattgtgaaccccaatatttggtccgcttactccagacgaagatgcgtattggattggct
gagcagacagtattagtagcactgggacatgcaatggtatattctgaagttccaccagtt
ccatcctcacaaatccagtctcggcttgaggaggcctcgaaaatagttaaacaagtctac
tctgtggctccgatatatgacaaaattgtgtctgctcttctttctgctggtgttaggaag
ctctcagatacatgttgctttactttgggtgtacctgttgggccaatgttagcaaagcca
acaaaaggtgtatcagagatcttagataagttccaggatactgaatttacttgtgaatac
aagtatgatggtgaacgtgcccagatacattacttggacaatgggtctgttgagatatac
agcaggaatgctgagagaaatactggaaagttcccagatgtcgtcgattcggtctcaaga
ttcaagaagccttctgttacatcttttgtgctggattgcgaagttgttgcttatgatcgt
cagaagcagaagattttgccgtttcaggttctcagcggtcgtgctcgaaaaggtgttact
ttgagtgaaataaaagtttcagtttgcattttttcttttgatattttgtatctcaatgga
cggcaactccttcaggaacaacttaaagttcgtagagagcttttgtatgattcatttcaa
gaagttgagggtgaatttcagtttgcaactgcaataacatcagatgatctggaagaaata
caaaagtttcttgataatgctatcaaccagagttgtgaaggattgatcatcaagacatta
gatagagatgcaacatatgagccggcaaagaggtctaataactggctgaaattgaagaag
gattatatggacagtgttggggattctcttgatttggttccaattgctgcatttcatggt
cgaggaaaacgtacaggagtttatggtgcattccttctcgcgtgctatgatgagcacaat
gaagagtatcagagcatatgcaaaattggcactggattttctgaagcaatgctcgaagag
cgctctgccagccttcgtgataaagttatttctgcaccgaagtcttactatcgatatggg
gatacattgaatccagatgtatggttcgaaccagctgaggtgtgggaggtcaaagctgca
gatttgagtattagccctgtccaccgtgcagccagtggtgtaatagacccaaacaagggc
atatctcttcgattcccccgtcttttacgggttcgtgaagacaagaatcctgatcaagcc
acatgttctgagcaggttggtgaaatgtacctcgctcaaaaaattaaccattcagggaac
caagatgaggatgaagattga

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