Amborella trichopoda: 18435385
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Entry
18435385 CDS
T02990
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein SEC16A homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
atr
Amborella trichopoda
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atr04131
]
18435385
Membrane trafficking [BR:
atr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
18435385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec16_C
Sec16
Motif
Other DBs
NCBI-GeneID:
18435385
NCBI-ProteinID:
XP_020523770
LinkDB
All DBs
Position
Unknown
AA seq
1619 aa
AA seq
DB search
MASPPFEVEDQTDEDFFDKLVNDDDDGITSSSFKKTILVGSSQDMTEVLDANDTESELPD
KAFSKLSLEDMGTSGETHEDLRDCVDKAPDDPVKDVLVAEESVSLRSFDSFVFNTVVERS
DSVTPLLGFDINGSAIPKVAPHLGFEVNGGLDPNATPYSRRETIGGVDHNKSESRRGSDV
TQTCVKEVQWSSFYAVSTQTDAGGFGSYSDFYSELEGDLADPNGGSGNSNIPAYFEPKND
PTLNRNQAPVTTFSSTTYQDDPASMSKAQSSFYRNNPVTFVSSTELRQEGTKTEEDGWNS
SGNSNDQSYGVNTSNTTDGWQDVYSIQHYESLYPGWKYDWTNKMWYQVDSHYESASSSFA
AKTLNQEGCIGQVYPSTGDGASISNQGSMNSSVTSFSNQSSESVVGTNNPSQGGSGYPSH
MYFDPQCPGWYFDMLANEWRSLDSYVQTTQSDTTQGDPKSGNQQAQDAKGSLINPIATEA
PVIAAKTLNQESCIRQGYPSAGDGASISNQGSMNSSGMPLLNQSSESVVGTNNPSQGDSG
YPNHMYFDPQCPGWYFDMLTNEWRSLDSYVQTTQSDTTQIDPKSGNQQAQDANVSLINAI
ATEAPVISEHGQTDGWTGYLSSHSHAKDQVHTSFPQQNVSYPGQTSTGQCGDSQYLGQSN
LYNSAWHDRSHGEQQMGFGNTATVPSYVPANYSHTNAKSQNFVTAETAYQFENMMADQQL
QTQVSSDFYGNQKAVDYSPPSIPNVSSNYTQFSYGMAGGRTTTGRPHHALVTFAFGGKLV
VMKPNNSFSSSAAIGSQDPAGGSISIINLMDIVVDKNDIMKDGSGASSYFHALCQQSFPG
PLVGGSASSRDVYKLIDERIANCAVSSADFREGGHLRLLLSLLKICCQHYGKLRSPFAAD
SATQEVDGPESAVTKLFASTRNTGLHMSEYGACTQCLQSLPSEAQSRATAIEMQNLLIAG
RKKEALQCGQEGQLWGPALVLAQQLGEEFYADTVKQMALRQFVPGSPLWMLTLFIFXAIL
LTVTTHVQWLXASLNGMLDDWKENVAIIAGNRIQGDQSVLVHLGDCLWRERDEVIAAQAC
YLVAELNIEPFSDTARLCLIGADHLKCPRTYASPEAIQRTEVYEYTKVQGNAQYILLPFQ
PYKVIYAHMLAEVGKVSDSLRYCQALSKSMKNAVRAPEAELWKSMISSLEERIRTHQQGG
YSSNLAPAKLVGKLFTTIDRSIHRMIGAPPPPLPPLPGNALSSEPDNHLGISNVVNNSSR
MSSGSLMPSASMDPISEWTGDNNKFTVQSRSISEPDFGSSLIQKDAASQKHSESKALASG
GGNRFGRFGSSILQKAVGLVSRNRQAKLGEKNKFYYDEKLKRWVEEGAEPPPAEAVLAPP
PTMASFQNGTPDYNPNSTVDKEVSPSNGVQGIKSPIPSGHTSGMPPIPPSTNQFSSRGRM
GVRSRYVDTFNKGGGTSQSPSFQSPAAQIAKKPSTPSKFFVPTQATPSESIIQNDAGTTS
ENMIGTNGEDPSISGMHTSLPPIPSSSSMPRFASLDNVTSISSKGTMGLGKEMESLNSLS
RAASWSGGFPQMIGHKPLNLAGGPSLSSSHSNSSLMNAVDTAYFPNSSGSFSDLQEVEL
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcctccatttgaagtggaggatcaaacagacgaggatttctttgacaaactt
gtcaatgatgatgatgatggaataaccagttcgtcttttaagaaaactattttagttggt
tctagtcaggatatgacagaagttcttgatgctaatgataccgaaagtgagctacccgac
aaagcattctcaaagttaagtcttgaggatatgggaactagtggagaaacccacgaagac
ttaagagactgtgttgataaagcaccagatgaccctgtaaaggatgtattggttgctgag
gaaagcgtctctttgagatcctttgattcatttgtcttcaacacagttgtggaaagaagc
gattcagtcacacccttattggggtttgacattaatggtagcgctattcctaaggtcgca
ccccatttaggctttgaagttaatggtggccttgatcccaatgccacaccatattcaagg
cgtgagaccattggtggggttgatcataataagtcagaatctagaagagggagtgatgtt
acccagacatgtgtgaaggaggtacagtggagtagtttttatgctgtgtctactcagact
gatgctggtgggtttggttcctactctgacttctacagtgaattggaaggtgatttagct
gatcctaatggaggttcaggaaatagcaatataccagcatactttgaacccaaaaatgac
cctacccttaataggaatcaggcccctgttactacgtttagttccactacatatcaagat
gatcctgcgtcaatgagcaaggcccaatcttctttctatagaaacaatccggttactttt
gtctcctcaactgaattgcgacaagaaggaactaaaacagaggaagatggatggaattcc
tctggcaatagcaacgatcaatcctatggtgtaaatactagtaatacaactgatgggtgg
caagatgtgtacagtattcaacactacgaaagtctttaccctggttggaagtatgactgg
acaaacaagatgtggtatcaggtggacagccactatgagtcggcgtcaagttcttttgca
gccaaaacacttaaccaagaaggctgtatcgggcaggtgtatccaagcaccggtgatggt
gctagcatatctaaccagggatctatgaatagttcagtgacatctttctcgaatcaatca
tctgaatcagttgtgggaaccaacaatccttcacaaggtggttcgggttacccgagtcat
atgtattttgacccccaatgtcctggctggtactttgatatgcttgccaatgaatggcgc
agtttggattcgtatgttcagacaactcaatctgatacgacacaaggagacccaaaatct
ggaaaccagcaagcccaggatgcaaagggttcattgattaatcccattgccaccgaagct
cctgttattgcagccaaaacacttaaccaagaaagctgtatcaggcaggggtatccaagc
gctggtgatggtgctagcatatctaaccagggatctatgaatagttcagggatgcctttg
ttgaatcagtcatctgaatcagttgtgggaaccaacaatccttctcaaggtgattcaggt
tacccgaatcatatgtattttgacccccaatgtcccggctggtactttgacatgcttacc
aacgaatggcgcagtttggattcgtatgttcagacaactcaatctgatacaacacaaata
gacccaaaatctggaaaccagcaagcccaggatgcaaatgtttcattgattaatgccatt
gccactgaagctcctgttattagtgaacatggtcaaactgatggatggactggatatttg
agtagtcattctcatgctaaagaccaggtccataccagttttccacagcagaatgtgtcg
tatcctggccagacttctacaggccaatgtggggattcccaataccttggtcaaagtaat
ttgtataattcagcatggcatgatagaagtcatggagaacaacaaatgggttttgggaac
acagcaacggtgccttcttatgttcccgcaaattacagtcacaccaatgcaaagtcacaa
aactttgtcactgcagaaactgcttatcagtttgagaatatgatggcagatcagcagttg
caaacacaagtcagcagtgatttctatggaaatcagaaagcagtggattattctcctcca
tcgattcctaatgtgagttcaaattatacacaattctcatatggtatggcaggaggaaga
acaaccacaggacgccctcatcatgctttggttacttttgcttttggaggaaagcttgtg
gttatgaagccaaataattctttcagttctagtgctgccattggaagtcaggacccagcg
ggaggctccatttcaattattaatttgatggacattgtggtggacaagaatgacatcatg
aaggatgggagtggtgcaagcagttacttccatgccttgtgccaacaatctttccccggc
ccacttgtcggtggcagtgcttctagtagggatgtgtataaattgatagatgagaggatt
gcaaattgtgcagtttcctcggctgattttagggagggagggcatttgaggctgctttta
tccttgttgaaaatttgttgtcaacattatggaaagctgcggtctccttttgctgctgac
tcagcaactcaggaagttgatggacctgagtcagctgtgacaaaactttttgcctctact
agaaacactggcctccatatgagtgagtatggtgcctgcacacagtgtttgcaaagcttg
ccttcagaggcacaaagtcgggccactgctattgagatgcaaaatcttctcattgctggt
agaaaaaaggaagctcttcaatgtggacaagaaggtcagttatggggccctgctcttgtt
cttgctcaacagcttggtgaagagttctatgccgatactgtgaaacaaatggcgcttcgt
cagtttgtaccaggatcacccttgtggatgttaactttgtttatattttgagccatctta
ttgacagtgacaactcatgttcaatggttataggcctcattgaatggaatgttggatgat
tggaaagagaatgtggccatcatagctggaaatagaatacagggtgatcagtctgtcctt
gtacaccttggggactgcctgtggagagagagggatgaggttattgctgcgcaagcctgt
tatttggtagctgaattaaacatagagcctttctctgacactgcaagactatgccttatt
ggtgcagaccacttgaaatgtcctcgaacatatgcttctcctgaggctattcagagaaca
gaggtgtatgaatacacgaaggtgcaaggcaatgcccagtatattttactgccatttcaa
ccttataaggtcatctatgcacacatgctggctgaagttggcaaggtttcagactctttg
aggtactgtcaagctttatccaagtcaatgaaaaatgctgttcgtgctcctgaagctgaa
ttgtggaagtctatgatatcatccttggaggaacgtatacgaactcatcaacagggagga
tacagctccaatttggcccctgccaaattagtgggtaagttatttaccactattgataga
tccattcaccgcatgatcggtgcaccaccaccacctttaccaccactgccgggtaatgca
cttagcagtgagcccgataaccatttagggatttcaaacgttgttaacaattcttcaaga
atgagcagtggatcactgatgccatcggcttcaatggaccccatcagtgaatggacaggg
gacaacaataaatttacagtgcaaagcagaagcatttcagagccagattttggtagcagc
ttgatacagaaagatgctgcctctcaaaaacattctgagtccaaagcattggcctctggt
ggaggaaatcgttttggccggtttggatcaagcattcttcagaaggctgtgggattggtc
tcaagaaaccgtcaggccaagctgggggagaaaaacaagttctattatgatgaaaagctt
aagagatgggtagaagaaggtgctgagccaccacctgcagaagctgtcttggcacctcca
ccaaccatggcaagttttcagaatggcacgcctgattacaatccaaacagcacagtcgac
aaggaggtatcaccctccaatggcgtacagggtatcaaatcacccattccctcaggacac
acttctggaatgcctccaattcctcctagcacaaatcaattctcttctcgtgggcgtatg
ggcgttcgatccaggtatgtcgatacgttcaacaaaggtgggggtacttcgcaatcccct
tctttccaatcacctgctgcccaaattgcaaaaaagccaagcaccccctcgaaattcttt
gtcccaacccaggccaccccaagtgaaagtatcattcagaacgatgcaggaactacaagt
gaaaacatgatcggtacgaatggagaagacccttctatatcaggcatgcatacatcacta
ccaccaataccttcatcatcatccatgccaagattcgctagcttggataatgtaacctcc
atttcgagtaaaggaacaatggggttgggaaaagagatggagtcccttaactccctgtcc
cgagctgcctcatggagtggaggcttcccccagatgatcggacacaagccactaaatttg
gcgggaggccccagtttatcatcttctcactccaattcttctttgatgaatgctgtagac
actgcctactttcctaatagtagtggaagtttcagtgacttacaagaagtggagctgtga
DBGET
integrated database retrieval system