Agrobacterium fabrum: Atu1778
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Entry
Atu1778 CDS
T00070
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
atu
Agrobacterium fabrum
Pathway
atu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
atu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Atu1778 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atu03400
]
Atu1778 (mfd)
Enzymes [BR:
atu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Atu1778 (mfd)
DNA repair and recombination proteins [BR:
atu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Atu1778 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
AAA_22
SecA_DEAD
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
AAK87548
UniProt:
A9CIN2
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All DBs
Position
circular:complement(1762494..1765991)
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AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVASADTPLTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALAGLINHAKKPHPAVVLVTVNAMLQK
MAPRDVIESLGFSARPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIAQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAKEAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQIYLDGKSFEAALASVNAVRLTPFNEHDSEG
RPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVKKLGKGEAACAVLSLEAGFETGTLAVIGEQDILGDRMVR
RSKRRKRGADFIAEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PALIAPDGLYDEFAARFPYDETEDQLNAIEAVRDDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLARQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
EGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEEVRDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRTANVEKVDAGPKGVVVQFRNKEFPNPAALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMVMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtggcgtcggccgatacgccgctgaccatcgga
aacgtaccatcaggcatggaagccctgctgctcgccgacatggcgcgggcggggacatcg
gtggcttacgtgatgtcggacggccagcgggtcgccgatctcgaacagatccttggtttt
gtcgcgccggatattccagtgctgacgctgccggcctgggactgtctgccctatgaccgc
gtctcaccgagtgcagatacatcggcgcgtaggcttgcggcgcttgccggcctcatcaac
cacgccaagaagccgcatccggccgtcgttctcgttactgtcaacgccatgctgcagaag
atggcgccgcgcgacgtcatcgaaagcctcgggttttcggccaggcccggcaaccagatc
cgcatggaggacatcgccgcgcggctggagcgcaacggtttcgaccgggtggcgacggta
cgcgaagttggcgaatttgccgtgcgcggcggcattctcgatgtcttcgtgccgggcacc
gaagagccggtgcggttggatttcttcggcgatacgctggaaagcatccgcaccttcgat
ccggccagccagcgcaccatcgcgcaggcgcgctcgcttgatctcaatccgatgagcgaa
gtgacgctgacgccggatacgatcgggcgtttccgcaagaactacctgtcgctgtttggc
gctgcgacccgcgacgacgcgctttaccaagccgtgtccgagggtcgccgttacgccggc
atggagcactggctgccgctgttttacgagcagctggagaccgccttcgactatttgaag
ggttttcgtatcgtcaccgatcatacagcgaaggaggcggcgaaagagcgctccaagctg
gtgcttgattattacgaggctcgccgcgcctctggcgaaaccaagggttcaacacagggc
gcgccttacaagccggtgtcaccggggcaaatctatctcgacggcaagagcttcgaggcg
gcgcttgcgagcgtcaatgcggtgcggctgacgccctttaacgaacacgacagcgaaggc
cgcccggtcgcgacgctcgacgcccatgtcggtccgcgctgggcacgcccaccgacagag
ggcgatagcgaagagcgggtcaatgttttcgatctagcggtaaagcacattgccgagcgc
cgcgccaagggctggaaagtactgataacaggctggtcggaaggttcgctcgaccggctg
ttgcaggtgctgaacgagcacgggcttgagaagatcaagcctgtgacatcgctgaaagag
gtgaaaaaactcggaaagggcgaggcggcttgcgcggttctcagcctcgaagccgggttt
gagaccggaacgctggcggtcatcggcgagcaggatattctcggcgatcgtatggtccgc
cgttccaagcgccgcaagcgcggcgcggatttcatcgcagaagtggcgggactggacgaa
ggttctctcgttgttcatgctgaacacggtatcggccgtttcgtcggcctgcagaccatt
gaggcggcgggtgcgccacgcgcctgtcttgaactgcattatgccgacgacgccaagctg
ttcctgccggtcgaaaacatcgatcttctctcgcgttacggttctgacgccgcggaagcc
acgctcgacaagctcggtggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
cttctcgacatggccgacgagcttattcgcattgcggcagcacgtctggtgcgccacgca
ccggcgcttatcgcaccggacgggctttacgacgaatttgccgcgcgtttcccttacgac
gaaaccgaggatcagttgaacgcgatcgaagcggtccgcgacgatctcggtgccggtcgg
ccgatggatcgcctcatctgcggcgatgtcggtttcggcaagaccgaagtggccttgcgc
gccgccttccttgccgccatgaacggcgtgcaggtggcggtcgtcgtgccgacgacgctt
ctggcgcggcagcatttccgcacattttcggagcgcttccgtgggttgccgatccgggtg
cagcaggcctcgcggcttgtgggttccaaggagctggcgcttaccaaaaaggaagtggcg
gaaggaaagaccgatatcgtcgtcggcacccatgcgctgctcggcgctggcatcagcttt
gccaatctcggtcttctcatcatcgatgaggagcagcatttcggcgtgaagcacaaggaa
cggctgaaggagctgaaaagcgacgtgcacgtgctgacgctttcggctacccctattccg
cgcacgctgcaactggccatgaccggggtgcgcgagctgtcgctcatcaccacgccgcct
gttgatcgcatggcggtgcgcaccttcatttcgcccttcgatccgctggtgatccgcgag
acgctgatgcgcgaacattatcgcggtggccagagtttctatgtctgcccgcgccttgcc
gatctcgccgatatccatgccttccttcaatcggatgtgccggagctgaaagtggcggtg
gcgcatggccagatggcggcgggcgaactggaagacatcatgaacgccttctatgacggc
aaatatgatgtgctgctgtccaccaccatcgtcgaatccggcctcgacgtgccgaccgcc
aatacgctgatcgtacaccgtgccgacatgttcggtcttgctcagctttaccagctgcgc
ggtcgcgtcggccggtccaaggttcgcgcctttgcgctgttcaccctgccggtcaacaag
gtgctgacaacgatggcggagcggcggctgaaagtgctgcaatcgctcgacacactcggc
gctggtttccagcttgccagccacgatctcgatattcgcggcgcgggcaatctgctcggc
gaagagcaatccggccacatcaaggaagtcggcttcgagctttaccagcagatgctggaa
gaggctgttgccgaagtgaagggcgacgaagaggtgcgcgacagcggctggtcgccgcaa
atctcggttggcacctccgtcatgatcccggaagattacgtgccggacctgcacctgcgc
atgggcctttatcgccgtctcggcgagcttgccgatatcagcgagatcgacggtttcggt
gcggaaatgatcgaccgtttcggcccgctgccgaaggaagtgcagcatctgctcaagatc
gtctatatcaagtcgctctgccgcaccgccaatgtcgagaaggtagatgccgggccgaag
ggcgtcgtcgtgcagttccgcaacaaggaattccccaatccggcagcgcttgtcggttac
atcggcaagcagggatccatggcgaaaatccgcccggaccacagcctgttcctgaaccgc
gatctgccgacgccggaaaaacggctgacgggtgcggcgatggtcatgacgcagcttgcg
gaactggcgcggtcgtaa
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