KEGG   Agrobacterium fabrum: Atu4632Help
Entry
Atu4632           CDS       T00070                                 

Definition
(RefSeq) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
atu  Agrobacterium fabrum
Pathway
atu03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:atu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Atu4632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atu03400]
    Atu4632
Enzymes [BR:atu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Atu4632
DNA repair and recombination proteins [BR:atu03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Atu4632
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M Ripply
Motif
Other DBs
NCBI-GeneID: 1136506
NCBI-ProteinID: NP_356030
UniProt: A9CGX3
LinkDB All DBs
Position
linear:1781477..1783792
Genome map
AA seq 771 aa AA seqDB search
MGLQTYNAKRSFDKTPEPKGTKAEKPGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWQPIGDAGKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHKGGADILEERPESVKTGR
SVEEVAKKPEDTWNSKPVSKKAGASTSGQKQAHALPKGARKQALPSFVPPALATLKPKPP
EGSRWLHEIKFDGYRLQARVDQGKLQLLTRSGLDWTEKFGAAVAAALTALPAETVLIDGE
IVVERDSGASDFSALQQDLSEGRDDRFVFYAFDLLYLDGSDLRGAALSERKALLEKLLPA
GDPHLRYSQHFEESGALVLDHACRLSLEGVISKVKSSKYVSGRKGEWVKSKCSMRQEFVI
GGYTVSSTSEHAIGSLALGVYENGKLRHVGRVGTGYSGDVAEMIFSRLKPLERKDSPFGD
KLTALARRDLHFVKPELVAEVEFRAWSGDGNLRHASFRGLREDKPAGEIEREEKAVSDSN
APQSQSKIKFTHPDRLYWPNDGVTKEGLADYYAQVWRHMAPFVVNRPLALLRCPEGIEGQ
RFFQKHAWRGINKAIEQIKDPKDKGGEPLIRITDFDGLMALVQSAALEIHPWGATTANWE
KPDMITMDIDPGEDVAWDAVIEAAQELKRRFEEAGLAAFVKTSGGKGLHVVSPLKPQAGW
APVKAFAKAMATDMSKAEPEKYLSVATKAKRQGRIFIDYLRNGRGNTAKRK
NT seq 2316 nt NT seq  +upstreamnt  +downstreamnt
atgggattgcagacttataacgccaagcgcagtttcgacaagacgccggagcccaaaggc
acaaaggctgaaaaaccgggatcgagtttcgtcatccagaaacacgatgcccgccgcctg
cattacgattttcgccttgaaatggacggggtgctgaaaagctgggcggtgacgcgcggc
ccgagcctcgatccggaagacaagcgccttgccgtgcatgtggaggaccatccactgagc
tacggcgatttcgaaggcgtcatccccaagggacaatatggcggcggcactgtgatcgtc
tgggatcgcggcatctggcagccgattggtgatgccgggaaaggatatcgaaagggccat
ctggagttcgagctcgagggagagaagctgaaaggccgctggcatctggtgcgcatgcac
ggcaagcccggagagagccgggagaactggctgctgatcaagggtgacgatgaggaggcg
aggcacaaaggcggtgctgatattctcgaggaaaggccggaatcggtaaagaccggccgc
agtgtcgaggaggtcgcaaaaaaaccggaggatacctggaattccaagccggtctcgaaa
aaggccggcgcctcgacatccggccagaaacaggcgcatgcgctgcccaaaggagcacgc
aaacaggccttgccctctttcgtgccgccggcactcgccacgctgaagccaaaaccgccg
gagggatcacgctggctgcacgaaatcaaattcgatggttaccggctgcaggcgcgagtc
gatcagggcaaacttcagctgttgacccgcagcgggctggactggacggaaaaattcggc
gccgccgtggcggctgcactcacggcgctgccggcggaaactgttctgatcgacggtgaa
atcgttgtcgaacgcgatagcggcgcttccgatttctctgccttgcagcaggacctgagc
gaaggacgcgacgaccggtttgtcttttatgcgtttgaccttctttatctcgatgggagc
gacctgcgcggcgcggcgttgagcgaacgaaaggcactgctggagaagctgttaccggcc
ggcgatccccatctccgctacagccaacatttcgaggaaagtggcgcgctggtgttggac
catgcctgccggctcagcctcgaaggcgtgatttccaaggtcaaaagcagcaaatatgtg
tccggccgcaagggcgaatgggtaaagtccaaatgttcgatgcgacaggaattcgtgatc
ggaggttacaccgtctcttcgacgtcggagcatgccatcggctcgctggctctaggggtc
tatgaaaacggcaagctgcgccatgtcggccgtgtcggaaccggttattccggcgacgtc
gcggagatgatattttctcgtctgaagccgctggaacgcaaggacagcccctttggcgac
aagctgaccgcgcttgcccgccgcgatctccattttgtgaagccggaactggtggcggag
gtggagtttcgcgcttggtcaggagatggaaatctgcgtcatgcatccttccggggtttg
cgggaagacaagccggcaggagagatcgaacgcgaggagaaggccgtgtcggatagcaat
gcgccgcagtcgcagtcgaagatcaagttcactcaccccgaccggctttactggccaaat
gacggcgtgaccaaggagggactggccgactattatgcgcaggtctggcggcatatggcg
ccctttgtcgtcaaccggccgctggcgctgttgcgttgccccgagggcatagagggccaa
cggtttttccagaaacacgcctggcgcggcatcaacaaagcgatcgagcagatcaaggat
cccaaggacaaggggggcgaaccgctgatccgcatcacggatttcgatggcctgatggcg
ctcgtgcaatccgcagcacttgaaatccacccatggggcgcaacgaccgccaattgggaa
aagcctgacatgatcaccatggatatcgaccccggcgaggatgtggcctgggacgcggtg
atcgaggcggcgcaagaactcaaacggcgcttcgaagaggcgggccttgccgctttcgtc
aagacgtcgggcggcaaggggctgcatgtggtctcgccgctgaaaccgcaggcgggctgg
gcgcccgtcaaggccttcgccaaagccatggccacggatatgtcgaaggccgagccggag
aaatatctctccgtcgccaccaaggccaagcgtcagggtcgcatcttcatcgattatctg
cgcaatggccggggcaatacggcgaagcggaaataa

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