Pseudazoarcus pumilus: C0099_02960
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Entry
C0099_02960 CDS
T05265
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
atw
Pseudazoarcus pumilus
Pathway
atw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
atw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0099_02960 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
atw03021
]
C0099_02960 (rpoC)
03400 DNA repair and recombination proteins [BR:
atw03400
]
C0099_02960 (rpoC)
Enzymes [BR:
atw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0099_02960 (rpoC)
Transcription machinery [BR:
atw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0099_02960 (rpoC)
DNA repair and recombination proteins [BR:
atw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0099_02960 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
PaaX
Motif
Other DBs
NCBI-ProteinID:
AUN96318
UniProt:
A0A2I6SAM6
LinkDB
All DBs
Position
625697..629950
Genome browser
AA seq
1417 aa
AA seq
DB search
MKGMLADLFKQTLPQEEEFDSITVGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGLTPLTRGQLLTEDDYVAKVEEYGDDFDA
LMGAEAVRELLRTLDLNHEVEKLRGELESTGSEAKVKKFSKRLKVLEAFQTSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRM
LQESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIFNKLELRGLATTIKQAKKMVESHEPVVWDILEEVIGE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLSSNNVLSPANGEPIIVPSQDIVLGLYYATREGVNEPGEGMHFADVAEARRAYE
SGYATLHARVSVRLNTVEFGPDGERVPVNRRYETTVGRALLSEILPAGLPFSIIDKALKK
KEISKLINAAFRRCGLKETVVFADKLMQYGFSLATRAGISISVKDMLMPVEKERLISAAE
AEVKDIADQYTSGLVTDGERYNKVVDIWGRCGDQVAKAMMDQLGEEDVVDREGKTVRQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTREGFSMKALIEGGEVVEALRER
ILGRVAAEDLINPDTQETVIEAGTLLTEDMVELIDSLGIDEVKVRTALTCETRYGICGKC
YGRDLGRGSDVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAVASGVEAKSGGSI
RFAGNMRYVTNAKGEKVVIARSAEVVVADELGRERERHKVPYGATLFVDDGMNVKAGVQL
ASWDPHTRPIITEYAGTVRFENVEEGSTVAKQIDEVTGLSTLVVIDSKQRGGAASKATRP
QVKLIDDQGEEVRIAGSEHAVAITFQVGSIITVKDGQQVGVGDVLARIPQESAKTRDITG
GLPRVAELFEARAPKDAGVLAEFTGTVSFGKDTKGKQRLVITEPDGISHDFLIPKDKHLM
VHDGQVVNKGEAVVDGPADPHDILRLQGIPALARYIIDEVQDVYRLQGVKINDKHIEVIV
RQMLRRVVITDPGDTRFIREEQVERSDVLEENDKMVAEGKLPATYENVLLGITKASLSTD
SFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHRNRKIQKSGGD
LGGDHAWPGFDEAVAENNAAAAATESSESQSPDVQAG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggcatgctcgctgacctgttcaaacaaaccctgcctcaggaagaggagttcgac
tcgatcaccgtcggactcgcctcgcccgagaagattcgctcgtggtcctacggcgaagtc
aagaagccggagaccatcaactaccgtactttcaagcccgagcgcgacggcctgttctgc
gccaagattttcggcccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgcggtgtgatctgcgagaaatgcggcgtcgaggtgacgctgtccaaggtgcgc
cgtgagcgcatgggccacatcgagctggccagcccggtcgcgcacatctggttcctgaag
agcctgcccagccgtcttggcatggtgctcgacatgaccctgcgcgacatcgagcgtgtg
ctctatttcgaagccttcgtcgtggtcgagcctgggctgaccccgctcacccgcggtcag
ctgctgaccgaggacgactatgtcgccaaggtcgaggagtacggcgacgatttcgacgcc
ctgatgggtgccgaggccgtgcgcgaactgctgcgcacgctcgatctgaaccacgaagtc
gagaagctgcgtggcgaactcgagtccaccggctccgaggccaaggtcaagaagttctcc
aagcgcctcaaggtgctcgaggccttccagacctcgggcatcaagcccgagtggatgatt
ctcgaagtgctgccggtgctgccgccggacctgcgtccgctggtgccgctcgatggtggc
cgcttcgcgacttccgacctgaacgacctgtaccgtcgcgtcatcaaccgcaacaaccgt
ctcaagcgcctgctcgaactgaaggcgccggacatcatcgtgcgcaacgaaaagcgcatg
ctgcaggagtcggtcgattcgctgctcgacaacggtcgtcgcggcaaggccatgaccggt
gccaacaagcgtccgctcaagtcgctcgccgacatgatcaagggcaagggcggtcgattc
cgtcagaacctgctgggcaagcgcgtcgactactcgggccgctcggtcatcgtggtgggt
ccgcagctcaagctgcaccagtgcggtctgcccaagctcatggcgctggagctgttcaag
ccgttcatcttcaacaagctcgagctgcgcgggctggcgaccaccatcaagcaggccaag
aagatggtggagagccacgagccggtggtgtgggacatcctcgaagaggtcatcggcgaa
cacccggtgatgctcaaccgcgcgccgacgctgcaccgcctgggcatccaggccttcgag
ccggtcctgatcgaaggcaaggccatccagctgcatccgctggtgtgcgtggccttcaac
gccgacttcgacggtgaccagatggccgtgcacgtgccgttgtcgctggaagcgcagatg
gaagcgcgcacgctgatgctgtcgtcgaacaacgtgctctctccggctaacggcgaaccc
atcatcgtgccgtcgcaggacatcgtgctgggcctgtactacgccacgcgcgagggcgtg
aacgagcccggtgagggcatgcacttcgccgacgtggccgaggcgcgtcgcgcctacgag
tcgggctacgcgacgctgcatgcgcgcgtgtcggtgcgcctgaacacggtcgagttcggt
cccgacggcgagcgcgtgccggtcaatcgtcgctacgagacgaccgtgggccgcgcgctg
ctgtccgagatcctgccggccggtctgccgttctcgatcatcgacaaggcgctaaagaag
aaggaaatctccaagctgatcaacgccgccttccgccgctgcggcctgaaggagacggtg
gtcttcgccgacaagctgatgcagtacggcttcagtctggccacccgtgcgggcatctcg
atttcggtcaaggacatgctgatgccggtcgagaaggagcgcctcatctccgcggccgag
gccgaggtcaaggacatcgccgaccaatatacctccggtctggtgaccgacggcgagcgc
tacaacaaggtcgtcgacatctggggccgctgtggtgatcaggtcgccaaggcgatgatg
gaccagctcggcgaagaggacgttgtcgaccgcgaaggcaagacggtccgtcaggagtcg
ttcaactccatctacatgatggccgactccggcgcgcgcggctccgccgcgcagattcgc
cagcttgccggcatgcgtggcctgatggccaagccggacggctccatcatcgagacgccg
atcacgaccaacttccgtgaaggcctcaacgtcctgcagtacttcatctcgacgcacggc
gcccgtaagggtctggccgacaccgcgctcaagaccgccaactcgggctatctgacgcgt
cgtctggtcgacgtcacgcaggatctggtggtcacggaggacgattgcggcacgcgtgaa
ggcttctcgatgaaggccctgatcgagggtggcgaggtcgtcgaggcgttgcgtgagcgc
atcctgggtcgcgtcgcggccgaagacctgatcaatccggatacgcaggagacggtcatc
gaggccggcacgctgctcaccgaggacatggtcgagctgatcgacagtctgggcatcgac
gaggtcaaggtgcgcacggcgctgacctgcgagacgcgctacggtatctgcggcaagtgc
tatggccgcgacctgggtcgcggttccgacgtcaacgtcggcgaagcggtcggcgtgatc
gccgcgcagtcgatcggcgagccgggcacgcagctgaccatgcgtaccttccacgtcggc
ggtgccgcctcgcgtgcggctgtggccagcggcgtcgaggccaagtcgggcggttcgatc
cgcttcgccggcaacatgcgctacgtcaccaacgccaagggcgagaaggtggtcatcgcg
cgttcggccgaggtagtcgtcgccgatgagctcgggcgcgagcgcgagcgtcacaaggtg
ccctacggtgcgaccctgttcgtcgatgacggcatgaacgtcaaggccggcgtgcagctc
gcctcgtgggatccgcacacgcgtccgatcatcaccgagtacgcgggcaccgtgcgcttc
gagaacgtcgaggaaggctcgaccgtggccaagcagatcgacgaggtcacgggcctgtcg
acgctggtggtcatcgactcgaagcagcgcggtggtgcggccagcaaggccacgcgtccg
caggtcaagctcatcgacgaccagggcgaggaagtgcgcatcgccggctccgagcatgcg
gtggcgatcaccttccaggtgggctccatcatcaccgtcaaggacggccagcaggtcggc
gttggcgacgtgctcgcgcgtatcccgcaggaatcggccaagacccgcgacatcaccggc
ggtctgccgcgtgtggccgagttgttcgaggcgcgcgcgcccaaggacgccggcgtgctc
gccgagtttaccggtaccgtgtcgttcggcaaggacaccaagggcaagcagcgcctggtg
attaccgaaccggacgggatctcgcacgacttcctgatccccaaggacaagcacctgatg
gtgcacgacggtcaggtggtcaacaagggcgaggccgtggtcgacgggccggccgatccg
cacgacatcctgcgtctgcagggtatcccggcgctggcgcggtacatcatcgacgaggtg
caggacgtctatcgtctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgtc
cgccagatgctgcgtcgcgtggtcatcaccgatccgggcgatacgcgcttcatccgtgag
gagcaggtggagcgctcggacgtgctcgaggagaacgacaagatggtcgccgaaggcaag
ctgccggcgacctacgagaacgttctgctgggtatcaccaaggcgtcgttgtcgactgac
tcgttcatctcggccgcttccttccaggagaccacccgggttctgaccgaggcggcgatc
atgggcaagcgcgacgatctgcgcggtctcaaggagaacgtcatcgtcggtcgtctgatt
ccggccggtaccggcatggcctatcaccgcaaccgcaagatccagaagagcgggggcgac
ctcggtggagaccatgcatggccggggttcgacgaggcagtggcggagaataatgccgcc
gcggcagcgaccgaatcgtccgagtcgcaatcgccggatgtgcaggctggttga
DBGET
integrated database retrieval system
