KEGG   Acidithiobacillus thiooxidans: GCD22_02597
Entry
GCD22_02597       CDS       T06281                                 
Symbol
yrrC
Name
(GenBank) recombinase RecD
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
atx  Acidithiobacillus thiooxidans
Pathway
atx03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:atx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    GCD22_02597 (yrrC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atx03400]
    GCD22_02597 (yrrC)
Enzymes [BR:atx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     GCD22_02597 (yrrC)
DNA repair and recombination proteins [BR:atx03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     GCD22_02597 (yrrC)
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_4 SH3_13 UvrD_C_2 HHH_5 Viral_helicase1 AAA_11 Helicase_RecD nSTAND3 HHH_2 UvrD-helicase T2SSE AAA_29 RsgA_GTPase AAA_16 NTPase_1 AAA_22 AAA PIF1 DEAD SLFN-g3_helicase NACHT PhoH TrwB_AAD_bind Herpes_Helicase AAA_28 ABC_ATPase ABC_tran AAA_23 AAA_7 ATP_bind_1 cobW UvrD_C AAA_5 AAA_14 SMC_N TsaE RuvB_N ATPase_2 CbiA MMR_HSR1
Other DBs
NCBI-ProteinID: QFX96774
UniProt: A0A5P9XT82
LinkDB
Position
complement(2298503..2300686)
AA seq 727 aa
MAKSERPQQDVPTELLGGLIERVTFHNDNNGFCVLRIKARGHRDLVTLVGHAAAVTAGEW
ITASGIWVTDRDHGLQFKAAFLKVSAPTSREGIEKYLGSGMIRGIGPVYAKKLVKAFGEQ
VFTVIEETPERLAEVDGIGPIRRERMVAAWADQKVIREIMLFLHTHGVGTARAVRIFKTY
GIDAVRIMTENPYRLARDIHGIGFKTADAIAMKMGIAQNAPIRVQAGISYALMEARDDGH
CGLPHEALTPLAEQLLEVPIDAIEAAIAAEIQEGTLIADQVQNTPGVFLAPLYRNEQGIA
QILKKLCAGQAPWSGIAADAAMDWVQKRLDIVLADSQKAAIRMVLQEKVALITGGPGVGK
TTLVNAILHILDAKKLRIVLAAPTGRAAKRMSETTGKEAKTIHRLLEINPLGGGFKRRED
YPLECDLLVLDECSMIDVPLMHALLKALPPTAGLLMVGDPDQLPSVGPGQVLADLIAAQT
LPEVHLTEVFRQAAQSRIIRAAHQIHAGHLPDLRPPEKLSDFYFIDVEDPAEAADKLVKV
VTTHIPRRFHLNPLRDIQVLCPMNRSALGARALNDALQTALNGESTPLVEKFGRRFAPGD
KVMQIQNDYEKDVFNGDIGFVQAVDTEENTLTVDFEDRMVSYGFGELDLLQPAYAITVHK
SQGSEYPAVVIPLSTQHYPMLQRNLLYTAVTRGKTLVILIGQKKAVAMATRNGSSKRRWT
KLCDWMI
NT seq 2184 nt   +upstreamnt  +downstreamnt
atggctaaatcggagcgcccccagcaggatgtgcccacagaactcctgggcggcctgatt
gagcgggtgacctttcataacgataacaatggcttttgcgtcctgcgcatcaaggcccgt
ggtcatcgggacttggtcaccctggtgggccacgcagcggcggttacggccggtgaatgg
atcaccgcatccggtatctgggtcaccgatcgcgatcacggcctccagttcaaggcggcc
tttttgaaagtgtctgcacccaccagcagagagggtatcgaaaagtatctgggctccggc
atgatccggggcattggtccggtttatgccaaaaagcttgtgaaagcatttggagaacag
gtattcacggtgatcgaagaaaccccggaaagactggctgaggtggacggaatcggcccc
attcgccgggaacggatggttgccgcctgggcagaccagaaagtgatccgggagatcatg
ctgttcctgcatacccatggggtaggtactgcccgcgctgtacggatttttaaaacctat
ggcatcgatgctgtccggataatgacagaaaacccctacaggctggcccgggatatacat
gggataggcttcaaaacggccgatgccatcgccatgaaaatgggtatcgcgcaaaatgcc
cccatacgggtgcaagccggtatttcctatgcgctgatggaagcccgggatgacggtcac
tgtggattaccccacgaggcattgacccctctggcagagcaattactggaagtaccaatc
gacgccatcgaagcagccatagcagccgaaatacaggaggggaccctcatagccgaccag
gtgcagaacacccctggggtttttctggcccccttataccgcaacgaacaaggcatcgcc
caaatcctgaaaaaactctgtgcgggccaggcgccgtggtcgggcattgccgctgatgcg
gcgatggattgggtgcaaaaaaggttggacattgtcctggccgatagccaaaaagcggcc
atccgtatggtgttgcaggaaaaagtggctctgattaccggcggtccaggcgttggtaaa
accaccctcgtgaatgccattctccatatcctggatgccaaaaagttgcgcattgtcttg
gcggccccgaccggacgagccgctaaacggatgagtgaaacaacgggcaaagaagccaag
accatccatcggcttttggaaattaatccgctgggcggtggtttcaagcgccgggaagac
tatcccttggaatgtgatctgctggttctcgacgaatgctccatgattgatgtcccgttg
atgcatgcgctgctcaaagccttgccgccgactgcagggctgttgatggtaggggatccc
gatcagctcccttctgttggacctgggcaggtactggcggatctgattgccgcgcaaaca
ctccccgaagtgcatctgacggaagtttttcgccaggccgcacaaagccggattattcgg
gcggcccaccagatccatgccgggcacctccctgatctccgtccacccgaaaagctcagt
gatttctattttattgacgtagaggatcccgctgaagcggctgacaagctggtgaaagtg
gtgacgacccatatcccccgacgttttcacctgaaccccttgcgcgacattcaggtgctc
tgccccatgaatcgtagtgcgttaggtgctcgggcactcaacgacgctctgcagacggcg
ttgaatggtgaaagcacaccgctagtcgaaaagttcggtcggagattcgcgcccggtgat
aaggtcatgcagattcagaatgactacgaaaaagacgtcttcaacggcgacatcggattt
gtgcaggcggtagataccgaagaaaacaccctgactgtggactttgaggatcgtatggtc
agctatggtttcggggagttggatctgttgcaaccggcctatgccatcacagtccacaag
agtcagggctcggaatatcccgcagtggtgattcctctgagtacgcaacactatcccatg
ctgcagcgtaacttactatacacagcggtaactcggggcaagacgctggtgatactcatt
ggccagaagaaagcggtagccatggcgacacggaacggttccagtaaaagacgctggaca
aaactatgcgattggatgatatga

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