Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2: IPK37_13250
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Entry
IPK37_13250 CDS
T07017
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aus
Austwickia sp. Fred_18-Q3-R57-64_BATAC.85v2
Pathway
aus03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aus00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPK37_13250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aus03021
]
IPK37_13250
03400 DNA repair and recombination proteins [BR:
aus03400
]
IPK37_13250
Enzymes [BR:
aus01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPK37_13250
Transcription machinery [BR:
aus03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPK37_13250
DNA repair and recombination proteins [BR:
aus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPK37_13250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QQR99922
LinkDB
All DBs
Position
2902377..2906267
Genome browser
AA seq
1296 aa
AA seq
DB search
MLDVNFFDELRIGLASADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSGVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEEGRHRDLPSLEAQLESEKKVLANQRDADVEARAQKLEAD
LAELEAEGAKGDARRKVREGAEREMNNLRKRADAQIERLEQVWDRFKNLKVQDLEGDEIL
YREMRDRYGLYFEGGMGAAALQRRLETFDLEAEANLLREIIATGKGQRKTRALKRLRVVT
AFQVTGNTPMSMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLDHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAVQIHPLVCSAFNADFDGDQ
MAVHVPLSTEAQAEARILMLSSNNILKPADGRPVTMPTQDMIIGLFHLTSEVAEGRGAGR
AFRSEAEARMAFDAGELEIGSMITLRLQDLVPPVGVELPEGVEAGEGGRVPEMILTTTLG
RAIFNRTLPMDYPFVDAPVDKKRLSTIVNDLAERYSKVQVAASLDALKETGFHWATRSGT
TVSVSDVVTPPRKGEILSGYEAKAEKVQTQYERGLITDDERRQELIEIWTQATNEVAKEM
ETNLPRTNPIFRMVSSGARGNWMQLRQIAGMRGLVSNPKGDIIPRPIKSNFREGLSVLEF
FISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTDRGLFMPIATRNSQGA
LVQHDDVETSVYARTLAEDVVDASGTVLAEAGIDLGDVVIGALVAAGVEKVKVRSVLTCD
SHVGTCALCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGL
PRVVELFEARTPKGVAPIAEATGRVQIEETDKARRILLTPDDGSEGHAYPVSKRARLLIA
DGDHVDVGTKLVQGAVDPKQVLRIQGPRAVQMHLVDEVQAVYRQQGVSIHDKHIEVIVRQ
MLRRVTIIEAGDAELLPGSMAERGAFETENRRVVAEGGKPASGRPELMGITKASLATDSW
LSAASFQETTRVLTDAAIHAKSDPLLGLKENVILGKLIPAGTGLPRYRNIKVEPTEEAKA
AMYAMPDYQQFDYPVFGPGSGEAVRLDDASLGLDRD
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgacgtgaacttcttcgatgagctgcggatcggcctggccagcgcggacgacatc
cgcgcgtggagccacggcgaggtgaagaagcccgagaccatcaactaccgcaccctcaag
cccgagaaggacggccttttctgcgagaagatcttcggcccgacccgggactgggagtgc
tactgcggcaaatacaagcgcgtccgcttcaagggcatcatctgcgagcgctgtggcgtg
gaggtgacccgctccggcgtacgtcgggagcggatgggacacatcgagctcgccgcgccg
gtgacccacatctggtacttcaagggcgtgccgagccgcctcggctacctgctggacctg
gccccgaaggacctggaaaaggtcatctacttcgcggcgtacatgatcacctcggtggat
gaggagggtcgccaccgcgacctgcccagcctggaggcgcagctggagtccgagaagaag
gtgctggccaaccagcgcgacgcggacgtggaggcgcgggcccaaaagctcgaggccgac
ctggccgagctggaggccgagggcgccaagggcgacgcgcgccgcaaggtgcgcgagggt
gccgagcgggagatgaacaacctgcgcaagcgggccgacgcccagatcgagcggctcgag
caggtctgggatcggttcaagaacctcaaggtccaggacctggagggcgacgaaatcctc
taccgcgagatgcgggaccgctacgggctctacttcgagggcggcatgggcgcggccgcg
ttgcagcgccggctggagaccttcgacctggaggccgaggccaacctgctgcgcgagatc
atcgccaccggcaaggggcagcgcaagacgcgggccctgaagcggctccgggtggtcacg
gccttccaggtcaccggcaacaccccgatgtcgatggtgctcgactgcgtcccggtcatc
ccgccggacctgcgccccatggtgcagctcgacggtggccggttcgcgacgtcggatctc
aacgacctctaccgccgcgtgatcaaccgcaacaaccggctcaagcggctgctcgacctc
ggcgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcacgggtccgggcaaccgcccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccggttccggcagaacctgctcggcaag
cgcgtcgactactccggccgctcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtcatgaagcggctg
gtcgacctcgaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgggcccgc
cccgtggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctcaaccgc
gcgcccacgctgcaccgcctgggcattcaggccttcgagccgcagctggtcgagggcaag
gccgtccagatccacccgctggtctgctcggcgttcaacgccgacttcgacggcgaccag
atggccgtgcacgtgccgctgtcgaccgaggcgcaggccgaggcccgcatcctcatgctg
tccagcaacaacatcctcaagccggcggacggccgcccggtgaccatgcccacccaggac
atgatcatcggcctgttccacctgacctccgaagtggccgagggccggggcgcgggtcgc
gcgttccgctcggaggcggaggcgcggatggcgttcgacgcgggcgagctggagatcggc
tcgatgatcacgctgcggctgcaggacctggtgccgccggtgggcgtcgagctgcccgag
ggcgtcgaggccggcgagggtggccgggtcccggagatgatcctgacgaccacgctgggc
cgggccatcttcaaccggaccctgcccatggactacccgttcgtggacgcgccggtcgac
aagaagcgcctgtcgacgatcgtcaacgacctggccgagcgctacagcaaggtgcaggtc
gcggcgagcctcgacgcgctgaaggagaccggtttccactgggcgacccgctcgggcacg
accgtctcggtctccgacgtggtcacgccgccgcgcaagggcgagatcttgtccggctac
gaggccaaggcggagaaggtccagacccagtacgagcggggtctgatcaccgacgacgag
cgtcgccaggagctcatcgagatctggactcaggcgaccaacgaggtcgccaaggagatg
gagaccaacctcccgcggaccaacccgatcttccggatggtctcctcgggcgctcgaggc
aactggatgcagctgcgccagatcgccggcatgcgagggctggtgtcgaacccgaagggc
gacatcatcccgcgtccgatcaagtcgaacttccgcgagggcctgtccgtgctggagttc
ttcatctccacgcacggcgcccgcaagggtctggcggacaccgcgctgcggaccgcggac
tcgggctacctcacccggcgcctcgtggacgtctcgcaggacgtcatcatccgcgaggag
gactgcggcaccgaccgtggcctgttcatgccgatcgcgacccgcaacagccagggcgcg
ctcgtgcagcacgacgacgtggagacgagcgtctacgcccgcacgctggccgaggacgtg
gtggacgcgtccgggacggtgctcgcggaggccggcatcgacctcggtgacgtcgtcatc
ggcgcgctcgtcgcggccggggtcgagaaggtcaaggtccgctcggtcctgacctgcgac
agccacgtcggcacctgcgcgctgtgctacgggcgctcgcttgccaccggcaagctcgtg
gacatcggcgaggccgtcggcatcatcgcggcccagtcgatcggcgagccgggcacccag
ctgacgatgcggaccttccacaccggtggtgtggccggtgacgacatcacgcagggtctg
ccgcgtgtggtcgagctcttcgaagcccgcacgccgaagggtgtggccccgattgccgag
gccaccggccgcgtgcagatcgaggagaccgacaaggcgcgtcgcatcctgctcacgccg
gacgacgggtccgagggacacgcctacccggtgagcaagcgcgcccgcctgctcatcgcg
gacggcgaccacgtcgacgtcggcaccaagctcgtgcagggcgccgtcgaccccaagcag
gtgctgcgcatccagggcccgcgggccgtgcagatgcacctggtggacgaggtgcaggcg
gtgtaccggcagcagggtgtgtcgatccacgacaagcacatcgaggtcatcgtccggcag
atgctgcgccgggtgacgatcatcgaggccggcgacgccgagctgctgccggggtcgatg
gccgagcggggtgcgttcgagaccgagaaccgtcgcgtcgtggccgagggcggcaagccc
gcgtccggacgcccggagctcatgggcatcaccaaggcctcgctggccacggacagctgg
ctgtcggcggcctccttccaggagacgacccgggtcctcacggacgcggcgatccacgcc
aagagcgacccgctgttgggcctgaaggagaacgtgatcctcggcaagctgatccccgcg
gggaccggcctaccgcggtaccgcaacatcaaggtcgagccgaccgaagaggccaaggcc
gcgatgtacgcgatgcccgactaccagcagttcgactacccggtcttcggcccgggctcc
ggggaggccgtccgcctggacgacgcctcgctgggtctggaccgcgactga
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