Trichormus variabilis: Ava_1509
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Entry
Ava_1509 CDS
T00277
Name
(GenBank) extracellular solute-binding protein, family 5
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
ava
Trichormus variabilis
Pathway
ava02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
ava00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Ava_1509
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ava02000
]
Ava_1509
Transporters [BR:
ava02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Ava_1509
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
ABA21132
CyanoBase:
Ava_1509
UniProt:
Q3MD04
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All DBs
Position
1856924..1858543
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AA seq
539 aa
AA seq
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MTKFFSLFCLCLVLVISCTPRQQTTTPTSSATNSPSGDGRITVGTTLKPRTLDPADAYEL
ASLGLVFNMSDRLYTYEPGSTVIQPQLATALPKVSQDGLTYTILLRQGVLFHDGTAFNAK
AMEFSIQRFIENKGKPSFLLADTIASVKATGDYELTIQLKKPFAAFPSLLAFSGVCAVSP
TAYELGAGKFKPDTFVGTGPYKLAQYGTDSLRFDVFDKYWGEKPKNQGINVQIQTSPVNL
FNAFRTGAVDVAYQSLQPDQIKSLEAGAKKGDWQGITSQGSVVTFMALNRNQEPLDKLEV
RQAVATIIDRQLLNQRALFGQAEPLYSLIPTTFDVSQPIFKEKYGDANFDKAKQLLTAAG
FSPENPAKVQIWYPASSATRSLAAQTLKAIAEQNLGGILQFEVSTVEGATFYKDISKGVY
PAALVDWYPDFLDPDNYVQPFLACQKGSVVKGCEEGGSQTQGSFYYNEAVNKLIDQQRQE
QNPATRQKIFTEIQTQLSTDIPYIPLWQSKDYVFAQKGVSSVQLDPSQILVYKSIVKGQ
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattcttctctttattctgtctctgtttagttttggttatcagttgcactcct
cgccaacaaacaactacaccaacatcaagtgctactaatagtccctcaggggatggtcga
attacagtggggacgacactcaaaccacgaaccctagatccggctgatgcgtatgaatta
gcctctttggggttagtgtttaatatgagcgatcgcctctatacttatgaaccaggtagt
acagtaattcagccacaattggctacagcactaccaaaagttagccaggatggtttgact
tataccatactcttacgtcagggagtgctttttcacgatggtactgctttcaatgctaaa
gcaatggaatttagtatccagcgctttattgaaaataaaggcaaaccctcgttcttacta
gctgataccatagcttcggtgaaagctacaggcgattatgagctaacaattcaactaaaa
aaaccctttgcagcgtttccttcactgttagcattttctggagtttgtgcagtttcacct
acagcttatgaactaggtgcaggaaagtttaaaccagatacttttgtagggactggccct
tacaaattggcgcaatatggtacagattcactacgcttcgatgtatttgataaatattgg
ggagaaaaacccaagaatcaaggcattaatgtacagattcaaactagtccggtaaatcta
tttaatgctttccgtactggtgcggtagatgtagcttatcagtctctacaaccagaccaa
attaaaagcttagaagcaggtgctaaaaaaggagattggcaagggataacatctcaaggt
agtgttgttacttttatggctttgaatcgcaatcaagagcctttagataaactagaagtc
agacaagcagtagcgacaattattgaccgtcaacttttaaatcaaagagctttatttggt
caagctgaaccactttatagcttaattcctaccacttttgatgtgtcccaaccaatcttt
aaagaaaagtatggtgatgcaaactttgataaagctaaacaattgctaactgcggcgggg
ttttctcctgaaaatccagcaaaagtacagatttggtatcccgctagttccgccactcgc
agtttggcagcccagaccttaaaagcgatcgccgagcaaaaccttggtggtatacttcag
tttgaagttagtaccgttgaaggtgctaccttttataaggacatctcaaagggtgtatat
ccagcagctttagttgattggtatcccgactttttagacccagataattatgtacagcca
ttcttagcttgtcagaaagggtcagttgttaaaggatgtgaagagggcggtagccaaact
caaggttctttttactataacgaagctgtcaacaaattaatcgaccagcaacgtcaagag
caaaatcccgcaacccgtcagaaaatatttacagaaattcaaactcaattatcaactgat
attccttacattcctttatggcaaagcaaagactatgtgtttgctcaaaaaggtgtcagc
agtgtacaacttgacccatcgcaaattctcgtttataagtcgatagtcaaaggtcaatag
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