Azotobacter vinelandii CA6: AvCA6_46150
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Entry
AvCA6_46150 CDS
T02634
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
avd
Azotobacter vinelandii CA6
Brite
KEGG Orthology (KO) [BR:
avd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
avd03016
]
AvCA6_46150
Enzymes [BR:
avd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AvCA6_46150
Transfer RNA biogenesis [BR:
avd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AvCA6_46150
Prokaryotic type
tRNA splicing ligases
AvCA6_46150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AGK22108
UniProt:
M9YSA7
LinkDB
All DBs
Position
complement(4691187..4692617)
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AA seq
476 aa
AA seq
DB search
MNLSKFRQRGPFEWELPASGRMRVPGVIFASQALVEAMDDKVGEQIANVASLPGIVEAAY
AMPDAHWGYGFPIGGVAAFDAGEGGVVSAGGVGFDISCGVRSLHTGLKLADVEALKPRLA
DVLYRRIPAGLGSTGALRLSAREMDAMLLGGARWAVEAGFGDEADLARIEESGRMAGADP
AAVSEQAKKRQRDEMGTLGSGNHYLEVQVVDELFDIRAARAYGLSEGDVLATIHCGSRGM
GHQIGTDYLRAMVIAAARAGIALPDRELACAPLDSELGRRYLGAMRAAINCALANRQILT
RLTRQAFAELFPGIRLPLLYDVSHNTCKEEWHVLGGQRRRLFVHRKGATRAFAAGHAELP
AEYRQVGQPVLIGGSMGTASWVLAGAAGTGEHAFASACHGAGRAMSRHEALRRWQGRSVV
DELAARGILIRSPSLRGVAEEAPLAYKDVGAVVEAAERAGLAVRVARLRPLVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgaatctctcgaagtttcgccagcgcggccccttcgaatgggagctgccggccagtggg
cggatgcgcgtgccgggggtgatcttcgcctcgcaggcgctcgtcgaggcgatggacgac
aaggtcggcgagcagatcgccaatgtcgccagcctgccgggcatcgtcgaagccgcctac
gccatgcccgatgcgcactggggctacggtttcccgatcggcggggtggcggccttcgat
gccggggagggcggggtggtgtcggccggcggggtgggcttcgacatctcctgcggggtg
cgcagcctgcataccggactcaagctggccgacgtggaagcgctcaagccgcgcctggcc
gacgtgctctatcggcgcattccggccgggctcggcagcaccggggcgctgcgcctgtcg
gcccgggagatggatgccatgctgctcggcggcgcgaggtgggcggtcgaggcgggcttc
ggcgacgaggcggatctggcgcgcatcgaggagtccggccgcatggccggcgccgatcct
gccgctgtctcggagcaggcgaagaagcgccagcgcgacgagatgggcactctcggctcg
ggcaaccattacctggaggtgcaggtggtcgacgaactgttcgacatccgggcggcccgg
gcctatggcttgtccgagggcgacgtgctggcgaccatccactgcggctcgcggggcatg
ggccaccagatcggcaccgactacctgcgcgccatggtgatcgccgccgcgcgggcgggc
atcgccctgccggaccgcgagctggcctgtgcgccgctggattccgagctgggccggcgt
tacctcggcgccatgcgcgcggcgatcaactgcgcgctggccaaccggcagatcctcacc
cgactgacccggcaggccttcgccgagctgtttcccggcatccgcctgccgttgctctac
gatgtgtcgcacaacacctgcaaggaggaatggcatgtcctcggcggccagcggcggcgg
ctgttcgtccaccgcaagggcgcgacccgcgccttcgccgccgggcacgccgagctgccg
gcggagtaccgccaggtcggccagccggtgctgatcggcggcagcatgggcaccgcctcc
tgggttctcgccggcgcggcgggtaccggcgagcacgccttcgcctcggcctgccacggc
gccggccgggcgatgagccggcacgaggcgctgcgccgctggcagggacgctcggtggtg
gacgagctggccgcccgtggcatcctgatccgcagcccgagcctgcgcggcgtggccgag
gaagcgccactggcctacaaggacgtcggtgcggtggtggaggcggccgaacgggcggga
ctggcggtgcgggtggcgcggctgcggccgctggtgtgcatcaaggggtga
DBGET
integrated database retrieval system
