Avibacterium volantium: NCTC3438_00002
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Entry
NCTC3438_00002 CDS
T06626
Symbol
dnaN
Name
(GenBank) DNA polymerase III subunit beta
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
avt
Avibacterium volantium
Pathway
avt03030
DNA replication
avt03430
Mismatch repair
avt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
avt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC3438_00002 (dnaN)
03430 Mismatch repair
NCTC3438_00002 (dnaN)
03440 Homologous recombination
NCTC3438_00002 (dnaN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
avt03032
]
NCTC3438_00002 (dnaN)
03400 DNA repair and recombination proteins [BR:
avt03400
]
NCTC3438_00002 (dnaN)
Enzymes [BR:
avt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NCTC3438_00002 (dnaN)
DNA replication proteins [BR:
avt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NCTC3438_00002 (dnaN)
DNA repair and recombination proteins [BR:
avt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NCTC3438_00002 (dnaN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_2
DNA_pol3_beta_3
SLS
Motif
Other DBs
NCBI-ProteinID:
VEB21608
UniProt:
A0A447SME4
LinkDB
All DBs
Position
1:1373..2473
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AA seq
366 aa
AA seq
DB search
MQFTVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLHIEGQSLTITGTDLEVELSTQAQLN
SAEQNGNFTIPAKKFLDICRSFPDGSDITVNFEEDRALVLCGRSKFNLATLPADEYPNLA
DWQAEVDFTTTQATLRRLIDATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHRLAVC
TIPLEQDLQLHSVIVPRKGVLELARLLESNDQPARVQIGTNNLRIDLGHIIFTSKLIDGR
FPDYRRVLPRNAQRIMTGEWESLKQAFARAAILSNDKVRTVRLQLAENQLTITATNTEQE
QAEEIIDINYSGEEMEVGFNVSYLLDVLNALKCKQVRMRLTDASSSCLIEDVDDNSAEYV
IMPMRL
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttactgtatcaagagaaaatctgttaaaacccttacaacaagtgtgtggcgtg
ttgagcagtcgccctaatatccctgtgttaaacaatgtgttactacacattgaaggacaa
tctttaaccattacaggaactgatttagaagtagaactttccactcaagcacaactaaac
agcgcagagcaaaatggtaatttcacaatccctgccaaaaaatttcttgatatttgtcgc
agttttcctgatggttcagacattaccgtaaattttgaagaagatcgtgctttggtgctt
tgtggacgcagtaaatttaaccttgccaccttgcctgcggacgaatatccaaacttggcg
gattggcaagcagaagtggattttactaccacacaagccaccttacgccgcttaattgat
gccacgcaattttctatggcaaatcaagatgcacgttatttcttaaatggaatgaaattt
gaaacagaaggcaatttgctccgtactgtagcaacggacggacatcgccttgccgtttgc
accattccgttagagcaagatctacaacttcattctgtcattgtgccacgcaaaggtgtt
ttagaacttgcccgcttattagaaagcaatgatcaacccgctcgcgtgcagatcggcaca
aataatttacgtattgatttaggacacattattttcacctcgaaactcattgatggacgc
ttccctgattatcgccgagtgttgccacgcaacgcccaacgtattatgacaggtgaatgg
gaaagcctaaaacaagcctttgcccgtgcggctattttgtccaacgacaaagttcgcacc
gtgcgtttacagcttgctgaaaaccagctcacgatcaccgccaccaatactgagcaagag
caagcggaagaaatcattgacatcaattacagtggtgaagaaatggaagtcggctttaac
gtgagctatttgctcgatgtcctcaatgcactcaaatgtaagcaagtgcgtatgcgttta
acagacgcctcatcaagctgtttaattgaagatgtggacgataacagcgcagaatatgtg
attatgccaatgcgtttataa
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