Aliivibrio wodanis: AWOD_II_0398
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Entry
AWOD_II_0398 CDS
T03808
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
awd
Aliivibrio wodanis
Brite
KEGG Orthology (KO) [BR:
awd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
awd03016
]
AWOD_II_0398 (rnb)
Enzymes [BR:
awd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AWOD_II_0398 (rnb)
Transfer RNA biogenesis [BR:
awd03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AWOD_II_0398 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
Rho_RNA_bind
CSD
Motif
Other DBs
NCBI-ProteinID:
CED57044
UniProt:
A0A090IC53
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All DBs
Position
2:complement(502652..504712)
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AA seq
686 aa
AA seq
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MFQDNPLLAQLKQQIQEKLPKKEGTVKATDRGFGFLESDDKKKSIFIPPAQMKKVMHGDK
VVALIRTENDKAQAEPEQLVEQSITRFIGRIQMFKKRLQVMPDHPSLKNAIKAKARKGVN
PETLQEGDWVVAELTQHPLKGDQSFLCEVTHKITDSDDKIAPWWVTLAQNDLPNSEPEGI
DNWEIKDDADLVRIDMTETPFVTIDGESTKDMDDALYIKKQEDGSFELTIAIADPTAYIT
PDDSMDQVARKRGYTIYLPGRNIPMLPRDLSDQLCSLIENEERPAICCIVKVATDGTINE
ESINFFAATMKSHARLAYDNVSDFLEIGSCDKWQPTETIAQVVTELHEFAQARTLWRQTH
AVIFPDRPDYRFELDEENDVVAIHADMRRTANKLVEEAMVTANICAGKTLRNTFNMGVFN
SHAGIKSDKLKDVVEIVNQLDNAEFTEEHIATLEGFSELRRLLGTQPTSYLDARIRKFQT
YSETGNVPLPHYAMGLDIYATWTSPIRKYSDMINHRMLKAHILGKEPVQRPDDIVGEELA
LSRRYHRMAERNVSDWLYCRTLISEVEKGTEFTAEIFDINRAGMRVRLIENGAAAFIPGS
LIVDNKERIECSAEQGSISIDKHETFKLGDQLTVILAEVKEDTRNMVAKPLQAFPALINV
EAEEDVNLEVEIIDAEISINTEEKSD
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccactacttgctcaattaaagcagcagatacaagaaaaactccct
aaaaaagaagggacagtaaaagcaactgaccgtggttttggttttttagagtccgacgat
aaaaagaaaagtatttttattccaccagcacaaatgaagaaagtgatgcatggtgataaa
gtagtggcgttaatccgcactgaaaatgataaagcccaagccgagccagaacaattggtt
gaacaatcaatcactcgattcattggccgcattcaaatgttcaaaaaacgcttgcaagta
atgcctgatcatccaagcttgaaaaatgccatcaaagcaaaagctcgtaaaggtgtaaat
ccagaaaccttacaagaaggtgattgggttgttgctgaattaactcaacatccattaaaa
ggtgatcaaagctttctatgtgaagttactcataagatcactgacagcgatgacaagatc
gccccatggtgggtaacacttgctcaaaacgatttaccaaactctgagcctgaaggcata
gataactgggaaattaaagacgacgcagatctagttcgtatagatatgacagaaacgcct
ttcgttacaattgatggtgaatcaaccaaagacatggatgatgccctatacattaaaaaa
caagaagacggttcttttgaattaacgattgcgatagcagatccaaccgcttacatcaca
ccagatgacagcatggatcaagtcgctcgtaaacgtggctatactatttacttgccaggt
cgcaatattccaatgttgcctcgtgatttaagcgatcaattatgttcacttatcgaaaac
gaagaacgtccagcgatttgttgtatagtaaaagtagctactgatggcactattaatgaa
gagtctatcaatttctttgctgcaacaatgaaatctcacgcacgtttagcttatgacaat
gtatctgatttcttagaaataggctcgtgtgataagtggcagccaacagaaacgatcgct
caagtggttactgagctgcacgaatttgcacaagcacgcaccttatggcgtcaaactcat
gcagtgatcttcccagaccgtcctgattatcgctttgaattagacgaagaaaatgacgtt
gttgctattcacgcagatatgcgccgtacagcaaacaagctagttgaagaagcaatggtt
acggcaaatatctgtgcagggaaaacgctgcgtaatacctttaacatgggggtatttaac
tctcacgctggtattaagtcagataaattaaaagacgtggttgaaattgtaaatcaatta
gataacgctgagttcacagaagagcatatagcaacgctagaaggttttagcgaactgcgt
cgtcttcttggaactcagccgacttcatatctcgatgctcgcatccgtaagtttcaaacg
tacagcgaaacaggtaacgtaccactaccacattacgcaatgggtttagatatttacgca
acatggacgtctcctatccgtaaatacagcgatatgattaaccatcgtatgctgaaagcg
catattcttggtaaagaaccagtacagcgccctgatgatattgttggtgaagaattggca
ttaagccgtcgttaccatcgcatggctgaacgtaatgtaagtgattggttatactgccga
acgctgatatctgaagtagaaaaagggactgaatttacggctgaaatttttgatattaat
cgtgcaggtatgcgcgttcgtttaattgaaaatggggcagcagcatttattccaggttct
ttaattgtcgataataaagaacgtatcgaatgtagtgcggagcagggctctatttcaatt
gataagcatgaaacatttaaattgggtgaccaacttactgttattttagctgaagtgaag
gaagacacacgtaatatggtagcaaaaccattacaagccttccctgctttaatcaatgta
gaagctgaagaagatgttaatcttgaagttgaaataattgatgctgaaatctcaattaac
acagaagaaaaaagtgattaa
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