KEGG   Aliivibrio wodanis: AWOD_I_1202Help
Entry
AWOD_I_1202       CDS       T03808                                 

Definition
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
awd  Aliivibrio wodanis
Pathway
awd03030  DNA replication
awd03410  Base excision repair
awd03420  Nucleotide excision repair
awd03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:awd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AWOD_I_1202
   03410 Base excision repair
    AWOD_I_1202
   03420 Nucleotide excision repair
    AWOD_I_1202
   03430 Mismatch repair
    AWOD_I_1202
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:awd03032]
    AWOD_I_1202
   03400 DNA repair and recombination proteins [BR:awd03400]
    AWOD_I_1202
Enzymes [BR:awd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AWOD_I_1202
    6.5.1.6  DNA ligase (ATP or NAD+)
     AWOD_I_1202
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     AWOD_I_1202
DNA replication proteins [BR:awd03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    AWOD_I_1202
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     AWOD_I_1202
DNA repair and recombination proteins [BR:awd03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     AWOD_I_1202
   NER (nucleotide excision repair)
    Other NER factors
     AWOD_I_1202
   MMR (mismatch exicision repair)
    Other MMR factors
     AWOD_I_1202
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_OB_2 DNA_ligase_A_M RNA_ligase DUF4247
Motif
Other DBs
NCBI-ProteinID: CED71286
UniProt: A0A090IKR4
LinkDB All DBs
Position
1:1400979..1401833
Genome map
AA seq 284 aa AA seqDB search
MKNSTLSTLVAIGLLSPIALAFDEPNTASIPLTLANNYQSELDINLYWLSEKLDGIRAYW
TGSELLTRKGHKIYAPKWFTDPLPTDAIDGELWAGRGGFQKVARTVLDFKPDEEAWRDIR
FMMFDLPRSAGMFPKRYDELSAMEKSFKVPHLKLVVHHPVNSEEQLFNILDDISARNGEG
VMLRKLDTIYRPGRSDDLIKVKKHDDDEAIIVGYTDGKGKYKGMVGAFILRMPNGKEFKI
GSGLSDAVRANPPEIGTQITYRYNGYTDNGIPKFARYLAVREGY
NT seq 855 nt NT seq  +upstreamnt  +downstreamnt
atgaaaaactctacgttatcgacattggtcgctataggactattatccccaatagcatta
gcatttgacgaacctaatactgcttcaatacctctaactttggcaaataattatcaaagt
gaattagatattaatttatattggttaagtgaaaagcttgatggcatacgagcttattgg
acaggttcagagctacttactcgaaaagggcataaaatatatgcaccaaagtggtttact
gatccgctccctacggatgcgattgatggtgaattatgggcgggaagaggtgggtttcaa
aaagtagctagaacggtattggattttaaaccggatgaagaggcatggcgtgatattcgt
tttatgatgtttgatttaccacgctcggcaggaatgttcccaaaacgatatgatgaatta
tcagcaatggaaaaatcctttaaagtaccacatttaaagcttgtcgtgcatcaccccgta
aactctgaagaacaactttttaatatattggatgatatttctgctcgtaacggcgaaggt
gtgatgctacgaaaattagatacgatttatcgccctggccgtagtgatgatttaattaaa
gtcaaaaaacatgatgacgacgaagcaataattgtagggtataccgatgggaaaggtaag
tataaaggaatggtcggagcctttatattacgaatgcctaatggaaaagagttcaaaatc
ggtagtggactaagtgatgcagtaagagcaaatccaccagagataggcacgcagataaca
tatcgctataatggatatactgataatgggatccccaaatttgctcgttatcttgcggtt
cgcgaaggttattaa

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