Alloalcanivorax xenomutans: P40_06895
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Entry
P40_06895 CDS
T04770
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
axe
Alloalcanivorax xenomutans
Pathway
axe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P40_06895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axe03019
]
P40_06895
03009 Ribosome biogenesis [BR:
axe03009
]
P40_06895
Messenger RNA biogenesis [BR:
axe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P40_06895
Ribosome biogenesis [BR:
axe03009
]
Prokaryotic type
rRNA helicases
P40_06895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ARB45187
UniProt:
A0A9Q3ZI56
LinkDB
All DBs
Position
complement(1473769..1475439)
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AA seq
556 aa
AA seq
DB search
MLHSDSGFAALGLPAPLLDAIGKLGFETPSPIQERSIPVLLDGDDLLGQAQTGTGKTAAF
GLPLLARIDPEQRCPQLLVIAPTRELALQVADAMETFARQLRGVKVVAVYGGSEYRTQLR
ALRDGAQVVVGTPGRIMDHMQRGSLNLDRLQALVLDEADEMLRMGFIDDVEWILEHTPDE
RQLALFSATMPNVIRRVAERHLKSPKWIRIESDTTTNNGIRQRFWPVSGLNKLDAMCRIL
EGEPHDGVIVFARTKQSTLELAEQLQRRGLRAEALNGDIPQAQREKTVARLREGRFDLLI
ATDVVARGLDVPRISHVINYDMPADTEAYVHRIGRTGRAGRNGEAILFVSHRERGMLRAI
ERATGQSLESMDLPSVDALNSKRLAKLQEQLVAGLESKHREEAETVLSALREQLDLDDEK
LALGLAALLVAKEPVILKPAPVGKPPRAHKEGPRKDHPRKEGRPANNRRRAAGSDGDANG
DMQVYRVEVGHAHGVRPGNLVGAIANEAGLPSRLIGAIRIHQEHSTVALPQDLTAKQLNI
LKRTRVCQRPLSLEAL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgttgcatagcgattccgggttcgccgctttgggcttgcccgcgccccttcttgatgcc
atcggcaaactgggttttgaaaccccgtcgccgatccaggagcgtagcatccccgtcctg
ctggacggcgatgatctgctcggccaagcacaaaccggtaccggcaagaccgccgctttc
ggcctgccgttgctcgcccgtatcgatccagagcagcgttgcccacagctgctggtgatc
gcccccactcgcgaactggccctgcaagtggccgacgccatggaaaccttcgcccgccag
ttgcgcggcgttaaggtcgtggcggtatacggcggtagtgaataccgcacccaattgcgc
gcgttgcgagacggcgcccaggtggtggtgggcacccctggccggatcatggatcacatg
cagcgcggcagtctgaacctggatcgtctgcaggcgctggtgctggacgaagccgacgaa
atgctgcgcatgggcttcatcgacgacgtcgaatggatcctggaacacaccccggacgag
cggcagctggcgctgttttccgccaccatgccgaatgtgatccggcgcgtggccgagcgc
catctgaagtcaccgaagtggattcgcatcgaaagcgataccaccaccaataacggcatc
cgccagcgcttctggccggtctccggcctcaacaagctggacgccatgtgccgtatcctg
gaaggcgagccccacgacggcgtcatcgtcttcgcccgcaccaagcagtccaccctggag
ctggccgagcaactgcaacgccggggcctgcgcgcggaagccctgaacggcgatatcccc
caggcgcagcgggaaaaaaccgtggcccgcctgcgtgaaggccgctttgatttgctgatc
gccaccgacgtggtggcccgtggcctggacgtgccgcgtatcagccacgtgatcaactac
gacatgcccgccgacaccgaagcctatgtgcaccggatcggccgtaccggccgggccgga
cgtaacggcgaggcgatcctgttcgtgtcgcaccgtgagcggggcatgttgcgcgcgatt
gagcgtgccaccggccagagcctggaatccatggacctgcccagcgtcgacgcgcttaac
agcaagcgtctggccaagctgcaggagcagctggtggcgggcctggaaagcaaacatcgc
gaagaggcggagacggtactgagcgccctgcgcgaacagctggatctggacgatgaaaag
ctggctctgggcctggcggcgctgctggtggccaaggagccggtgattctcaagccggcc
ccggtgggcaaaccgccgcgcgctcacaaagagggccctcgcaaggaccatccgcgcaag
gaaggccggccggccaacaatcgccgccgtgccgccggcagcgacggcgacgccaacgga
gacatgcaggtttaccgggtggaagtgggccacgcccacggcgtacggccgggcaatctg
gtcggcgccatcgccaacgaagcgggtctgccgagccgcctgatcggcgccatccgcatt
catcaggaacacagcaccgtggcgctgccgcaggatctcaccgccaagcagctgaacatt
ctcaagcgcacccgcgtttgtcagcggccgctgtcgctggaagccctctga
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