KEGG   Achromobacter xylosoxidans NH44784-1996: NH44784_059851Help
Entry
NH44784_059851    CDS       T02785                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
axo  Achromobacter xylosoxidans NH44784-1996
Pathway
axo03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:axo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    NH44784_059851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:axo03400]
    NH44784_059851
Enzymes [BR:axo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NH44784_059851
DNA repair and recombination proteins [BR:axo03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NH44784_059851
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: CCH09926
LinkDB All DBs
Position
complement(6435694..6438306)
Genome map
AA seq 870 aa AA seqDB search
MADTLAKYRAKRNFNVTSEPAEGGQANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWAPVGDPADGYR
RGHLKFDLHGVKMRGRWALIRMKGRESEKQPPWLLVKDRDEHARAESEFSVVDEQPDSVA
TPPRTGARAVPAAAPGARPDAAASPSSSAPPSSDAGAAGLPGEAAPLPELLKPQLATLVE
GVPRQAGDDWIYEMKFDGYRLLARLRDGQVRLYTRNGHDWGPKLPHLVRALQRLPLPDAW
IDGEIVMLADNGAPSFQALQNAFDGERTDGILFYAFDLPYVTGRDLRQEPLRVRRAVLAR
VMEAAGGDPLRFSEAFDAAPADLVASACKMGLEGIIAKRLSAPYVSRRSDSWVKLKCARR
QEFVIAGYTDPKGARVGLGALLLAYHDEDGGLVYAGKVGTGFDDMGLAALQRRLSALETE
RPAVKAAGVGRGVHWVRPELVAEVSFGEWTASGHVRHPVFRGLRTDKPARAITREAAMGA
DTMQSDNAAGKTGKAKPGKAKPGNAQTGKAQAGKAQPGAGKLTHPERIIDPSTGLTKLDL
ARYDGLVAPLLLRHLKDRPVSFLRAPSGLKGEFFFQKHLEAPMPGVRPLPQELDPDHPPL
MEVPTPQAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGEGVAWPSMQQAARLVHV
MLREIGLRSWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHLARTLPQVFVAKSGPK
NRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWDELDEVRASDQWTIANIHTRL
DVGDAPWDDYTPQALGAAMKAMDFKPDSGG
NT seq 2613 nt NT seq  +upstreamnt  +downstreamnt
atggccgataccctggcgaaataccgcgccaagcgcaatttcaatgtgacgtcggagccg
gccgaaggcggccaggccaacgaggcggcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggatggcgccatgaagagctgggccgtg
cccaaggggcccagctacgacccgtcggtcaagcgcatggccgtgcaggtggaggaccat
cccattgcctacaaccgtttcgagggcgagatccccaagggccagtacggcgccggcaag
gtgatcatctgggaccggggcacctgggcgccggtgggcgatccggccgacggctaccgg
cgcggccatctcaagttcgacctgcatggcgtcaagatgcgcggacgctgggcgctgatc
cgcatgaagggccgcgagtcggaaaagcagccgccctggctgctggtcaaggaccgcgac
gaacacgcccgcgccgaaagcgaattcagcgtggtggacgagcagcccgacagcgtggcc
acgccgccgcggacgggcgcgcgggccgtgcccgccgcggcgcccggggcgcggccggat
gcggccgcatcgccgtcatcgtccgcgccgccgtcgtcggatgccggggcagcgggcctg
ccgggtgaggcggcgcccttgccggagctgctcaagccgcaattggccacgctggtggaa
ggcgtgccgcgccaggccggcgatgactggatctacgagatgaagttcgacggctaccgt
ctgctggcgcggctgcgggacggccaggtgcgcctgtacacgcgcaacggccacgactgg
gggccgaagctgccgcacctggtgcgggcgctgcagcgcctgccgctgcccgacgcctgg
atcgacggcgagatcgtgatgctggccgacaacggcgcgcccagcttccaggcgctgcag
aatgccttcgacggcgaacgcaccgacggcatcctgttctacgcgttcgacctgccctac
gtcaccggccgcgacctgcgccaggagccgctgcgcgtgcgccgcgcggtgctggcgcgg
gtgatggaggccgccggcggcgatccgctgcgcttcagcgaagccttcgacgcggcaccg
gcggacctggtggcctcggcctgcaagatggggctggagggaatcatcgccaagcgcctg
tcggcgccctacgtatcgcgccgcagcgacagctgggtcaagctcaagtgcgcccgccgg
caggaattcgtcattgccggctataccgatcccaagggcgcgcgggtggggctgggcgcg
ctgctgctggcgtaccacgacgaggacggcgggctggtctacgccggcaaggtcggcacc
ggctttgacgacatgggcctggcggcgctgcaacgccgcctgagcgccctggaaacggag
cggcccgccgtcaaggcggccggcgttggccgcggcgtccattgggtgcggcccgagctg
gtggcggaagtgtcgttcggcgaatggaccgcttcggggcatgtgcgccacccggtcttc
cgcggcttgcgcaccgacaagccggcgcgcgcgatcaccagggaggcggcgatgggggcc
gatacgatgcagtccgacaatgcggccggcaagaccggcaaagccaagccaggcaaagcc
aagcccggcaacgcccagactggcaaagcccaggcgggcaaggcccagccaggcgccggc
aagctgacccacccggaacgcatcatcgatccgtccacggggctgaccaagctggacctg
gcgcgctacgacgggctggtggcgccgctgctgctgcggcacctgaaggaccggcccgtt
tcctttctgcgcgccccgtccggcctgaagggcgagttctttttccagaagcacctggag
gcgccgatgccgggcgtgcggccgctgccgcaggaactggacccggatcatccgcccttg
atggaggtgccgacgccgcaggcgatcatgtcggcggcgcagatgaacgtggtcgagttt
cacacctggaacgcggtgaaaagcgcgatcgacaagcccgaccgcatgctgttcgacctg
gacccgggcgaaggggtggcctggccgtcgatgcagcaggcggcgcggctggtccacgtg
atgctgcgcgaaatcggtttgcgaagctggctcaagaccagcggcggcaagggcctgcac
gtggtggtgccgctgcgccggcagtacgactgggacacggtcaaggcgttctcgcaggcc
atcgtgcaacacctggcgcgcacgctgccgcaggtgttcgtggccaagagcgggccgaag
aaccgcgtcggcaggatcttcgccgactacctgcgcaacggcttcggcgccacgacggtg
gcagcctggtcggcgcgcgcgcggccgggcatgggggtgtcggtgccgctggcctgggac
gagctggacgaggtccgggccagcgaccagtggaccatcgccaacatccacacgcgcctg
gatgtcggcgacgcgccctgggacgactacacgccgcaggcgctgggcgcagccatgaag
gcaatggatttcaagccggattcgggcgggtag

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