KEGG   Achromobacter xylosoxidans A8: AXYL_00438Help
Entry
AXYL_00438        CDS       T01341                                 

Gene name
ligD1
Definition
(GenBank) DNA ligase D 1
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
axy  Achromobacter xylosoxidans A8
Pathway
axy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:axy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    AXYL_00438 (ligD1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:axy03400]
    AXYL_00438 (ligD1)
Enzymes [BR:axy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     AXYL_00438 (ligD1)
DNA repair and recombination proteins [BR:axy03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     AXYL_00438 (ligD1)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ADP13796
UniProt: E3HUH3
LinkDB All DBs
Position
462917..465445
Genome map
AA seq 842 aa AA seqDB search
MADSLKKYREKRNFAVTPEPPEGGESGDAGLVFVIQKHWASHLHYDFRLELDGAMKSWAV
PKGPSFDPSVKRMAVQVEDHPIAYNQFEGTIPKGQYGAGKVIIWDEGRWTPIGDPRKGYK
AGHLKFTLEGVKLRGRWALIRMKGKESDRQPPWLLIKESDEYAREDQDFSVVDEMPDSVV
PLRAKKKAEAARSKPQARAAKAVEAVAALPGKAAVLPASLKPQLATLVDGVPRGADDWSY
EMKFDGYRILARLEDGSVKLYTRNGHDWTARMPRLAQELAALEIANAWIDGEIVVLTREG
VPSFQALQNAFDAAGTADIVFYAFDLPYVAGRDLRDEPLSLRRDLLRQVIARCKGKHVKF
SEAFDKPPADLVASACKLGLEGIIGKRLSAPYVSRRTDDWIKLKCTQRQEFVIVGYTEPK
GSRKGFGALLLAVHEPDGALRYAGNVGTGFDDRTLLDLHRKLASIEQKTSALTQGKPRAL
KQVHWVQPTLIGEVSFGEWTGDGHVRHSTFRGLRTDKPPKKITREVAMPAEKLSPRNSTA
KAKAGGAAKPSKGMKLSNPDRVIDPSSGATKLDLARYYGLVAPLMMEHLRGRPVSFVRAP
AGIQGEHFFQRHSESPIPGVTALPERLYPGHPSLMEISNVAAILAAAQLNVVEFHTWNAL
KTSIGKPDRMLFDLDPGEGVDWPTVQQGAELVRVLLQELGLRGWLKTSGGKGLHVVVPIR
KQYGWDAVKDFSEAMVRHLAQTLPKLFVAKSGPKNRVGKIFADYLRNGFGATTVAAWSAR
ARPGLGVSVPVRWDELDGLKGSAQWTIANIHTRLDAGNEPWDDYAPQAIGRAMKQLGVEL
RS
NT seq 2529 nt NT seq  +upstreamnt  +downstreamnt
atggcggacagtctcaagaaataccgcgagaagcgcaatttcgccgtcacgcccgaaccg
cccgagggcggcgagtccggcgacgcaggcctggtgttcgtgattcagaagcactgggcc
agccatctgcactatgacttccgcctggagctggacggtgcgatgaagagttgggcggtg
ccgaaagggccgtcattcgatccctccgtcaagcgcatggccgtgcaggtcgaagaccat
cccatcgcctacaaccagttcgaaggcaccatccccaaggggcagtatggggccggcaag
gtgatcatctgggacgaggggcgctggactccaataggcgatccccggaagggctacaag
gcgggccatctgaaattcacgctcgagggcgtgaaactgcgcgggcgctgggcgctgatc
cgcatgaagggcaaagaaagtgatcgacagccgccctggttgttgatcaaggagagcgac
gaatacgcgcgggaggaccaggacttcagcgtcgtggatgagatgccggacagcgtggtg
ccgctgagggcgaagaagaaggcggaggctgcgcgcagcaagccgcaagctcgcgctgcc
aaggcggttgaagctgtcgcggccttgcccggcaaggccgctgtgctgcccgcgtcgctc
aaacctcaactggccaccctggttgacggtgtgccgcggggcgcggacgactggtcctat
gaaatgaagttcgacggctaccggatcctggccaggctggaggacggaagcgtgaagctg
tacacgcgcaacggccacgactggacggccaggatgccgcgcctggcccaggaactggcg
gcattggagattgccaatgcctggatcgacggagagatcgtggtgctgacgcgcgaaggc
gtgcccagctttcaggccttgcagaacgccttcgatgccgcgggtaccgcggatatcgtg
ttctacgcctttgacctgccctatgtggcggggcgcgatctgcgcgacgagccgctcagc
ttgcgccgggatctgctgcggcaggtgattgccaggtgcaagggcaagcatgtgaagttc
agcgaggcctttgacaagccgccagcggacctggtcgcctcggcctgcaagctgggcctg
gaaggaatcatcggcaagcgcctgtccgcgccctatgtgtcgcgccgcacggacgactgg
atcaagctcaagtgcacccagcggcaggagttcgtcatcgtgggctataccgaacccaag
ggcagccgcaagggctttggcgcgctgctgctggcggtgcatgagcctgatggagccctg
cgctacgccggcaacgtaggcactggtttcgacgacaggactttgctcgacctgcaccgc
aaactggccagcatcgagcagaaaaccagcgccctgacccaaggcaagccgcgcgccctc
aagcaggtccattgggtccagcccaccttgatcggagaggtctctttcggggagtggacc
ggcgacggccatgtacgccattcgactttccgggggttgcgtaccgacaaaccaccgaag
aagatcactcgcgaggtcgccatgccagccgaaaagctctccccgcgcaacagcactgcc
aaggccaaggcagggggcgcagcaaaaccctcgaaaggaatgaagctatcgaatcccgac
cgcgtgatagatccatcctccggggcgaccaagctagacctggcccgctactacgggctt
gtggcgcccctgatgatggagcacctgcgcggccggccggtctcctttgtccgggcgccc
gcggggatccagggcgagcatttcttccagcggcattcggaatcccctatcccgggggtg
accgcgctgcccgaacgtctctatccggggcacccctccctgatggaaatttcgaacgta
gcggcgatactcgcggctgcccagctgaacgtggtggagttccacacctggaacgcgctc
aagacctcgatcggcaagccggatcggatgctgttcgacctggaccccggggaaggggtg
gattggcccacggtccagcagggcgcggagttggtgcgcgtgctgctgcaggaacttggc
ctgcgcggctggctgaagaccagcggcggcaagggcctgcatgtggtcgttcccatccgc
aagcaatacggctgggatgccgtgaaggacttttccgaagccatggtgcgccatctggcg
caaaccctgccaaagctgttcgtcgccaaaagcggccccaagaatcgcgtgggcaagata
ttcgccgattatctgcgcaacggcttcggcgctacgacggtggcggcctggtcggcgcgc
gcccggcccggcctgggcgtgtccgttcccgtacgctgggatgaactggacgggctgaaa
gggtcggcgcaatggaccatcgccaatatccacacccgcctggacgcgggcaacgagcct
tgggacgactacgcgccgcaggcgatcggccgggccatgaagcagctcggggtcgagctg
cgatcttga

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