Achromobacter xylosoxidans A8: AXYL_01534
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Entry
AXYL_01534 CDS
T01341
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
axy
Achromobacter xylosoxidans A8
Pathway
axy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
axy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXYL_01534 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
axy03019
]
AXYL_01534 (rne)
03009 Ribosome biogenesis [BR:
axy03009
]
AXYL_01534 (rne)
Enzymes [BR:
axy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AXYL_01534 (rne)
Messenger RNA biogenesis [BR:
axy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXYL_01534 (rne)
Ribosome biogenesis [BR:
axy03009
]
Prokaryotic type
rRNA processing factors
AXYL_01534 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_Tnp_IS1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
ADP14872
UniProt:
E3HTA9
LinkDB
All DBs
Position
complement(1627243..1630326)
Genome browser
AA seq
1027 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSFFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEELKTSFELVEAPATDAPWQPREHEIKSRPEALVKGITPSQPAPVST
PAPAAAAPAPAAAGGLGGLFKRLFGWLGGSSEAAKPAPAVQEDSAKRASSGRGKGRSGHD
GQERRGERHGSDRNRNRRGESRAEGAEGSEGGRHHVRGNRRPEGERQERGDRHNRNEARG
ERDTQATQAALASNRPEQAVEAGGEDAGVGRNRRRGRGRNRREEGQSDAPMSEQESMVAA
LAQTVATALPETKPAPEAAELVAETSETVEQAADGLPGIEGAEGAADPERKRRRRRSRRG
RRSPDEAGLAGSDEQLEDGADDDGAEQSEDSAAQPAVSAAQAVEPAPVQQVAAAPAQPQQ
VEAAPVQVQEAAAAPAEPAKVAATPVAAQQVEPVQAAEAVAQPVQTVASEVTQPVSVQAA
SEASAPAASEQTPVEAAAVEPVLTPAPAAPVAPAAPVVQETVAPAPAAAPVASQPIVVPA
VAPSAKAQALHDVVNAAGLQWVETDPDRHAQTQLRIAAAHTPVRLGRERKPVASVSNEPL
VQVETRH
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaac
atctacaaaggtgtcatcacccggatcgaacccggcctcgaggcttgcttcgtcaactac
ggcgaagaccgccacggcttcctgcccttcaaggaagtagcccgcagcttcttcaaggaa
ggcgtggacgtccgcagcgcccgcatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggttgaaaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggctggccgctacctggtcctgatgcccaacaacccccgcggcggcggtgtttcgcgc
cgcgtcgagggcgaggaccgccaggaactgcgcgacaccatggagcagctcgatctgccc
cagggcatgagcatcatcgcccgtaccgccggcatcggccgcaacgtcgaagaactccag
tgggacctgtcctatctgttgcagctctggacggccatcgatggcgccgcgcgcgacaac
tccgcgcccatcctgatctacctggaatccagcctggtcatccgggccatccgcgactac
ttctccccggaaatcggtgagatcctcatcgataccgacgagatcgccgatcaggccacg
gcctttatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgat
atcccgctgttctcccgcttccagatcgaacaccagatcgaaacggcctactcgcgcacg
gtgacgctgccttcgggcggcgccatcgtcatcgaccacaccgaagccctggtttccgtg
gacgtcaactcggcccgctccacgcgcggcgccgacatcgaggaaaccgcgctgcgcacc
aactcggaagccgccgacgaagtggcccgccagttgcgtttgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgacgccctccatttcgaccgcgcccgcgtccagatgggcaagatttcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgcccggccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaagaagaagccatgaaggaaaacaccgccgccgtgcacgcccaa
gtgccggtcgacgtggctacctacctgctgaacgaaaagcgcgccgacatcaccaagatg
gaagcccgcctcaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgatccgcgcctggaagaactgaagaccagcttc
gaactggttgaagctccggccacggacgccccctggcagccgcgcgagcacgagatcaag
tcccgtccggaagcgctggtcaagggcatcacgccttcgcagcccgctccggtttcgacc
ccggctcccgccgccgcggctcccgctccggcagcagccggcggcctgggcggcctgttc
aagcgcctgttcggctggctgggaggcagctccgaggcggccaagcccgctcccgccgtc
caggaagacagcgccaagcgggccagctccggccgcggcaagggccgcagcggccatgac
ggccaggaacgccgtggcgaacgccatggttcggaccgcaaccgcaaccgccgcggcgag
tcgcgcgccgaaggcgccgaaggcagcgagggcggccgccatcacgtgcgcggcaaccgc
cgccccgaaggcgaacgccaggaacgcggcgatcgccacaaccgcaacgaagcccgcggc
gaacgcgacacccaggccacgcaagcggccctggcgtccaaccgtcccgagcaagccgtg
gaagccggcggcgaagatgccggcgtcggtcgcaaccgccgtcgcggccgcggccgcaac
cgccgcgaggaaggccagtccgacgcgccgatgagcgaacaggaaagcatggtcgccgcc
ctggcgcagacggttgccaccgccctgcccgaaaccaagcctgcccctgaagctgccgag
ctggtcgccgaaacctccgaaaccgtcgaacaggccgccgatggcctgcccggcatcgaa
ggcgccgaaggcgcggccgatcccgagcgcaagcgccgccgccgccgcagccgccgtggc
cgccgcagcccggacgaagcaggtctggccggcagcgatgagcagctcgaagatggcgcc
gacgatgacggcgccgagcaatcggaagactccgctgcccagcccgccgtgagcgccgcg
caagccgtggagccggccccggtccagcaggtcgcagccgctccggcccagcctcagcaa
gtcgaagccgctccggtgcaagtccaagaggctgcagccgcaccggctgaacccgccaag
gttgccgccactccggttgcagcccaacaggtcgaacccgtgcaagccgctgaagccgtg
gcccagcccgtgcagacggtggcctccgaggtaacgcagccggtttccgtgcaagccgcg
agcgaggcttccgcccccgcagcgtccgaacagacaccggtggaagccgctgccgtcgaa
cccgtgctcacgcccgcccctgccgcccccgtcgcccctgccgcgccggtggtccaggaa
acggtggccccggcgcctgccgccgcgcccgtagccagccagcccatcgtggtgccggca
gttgctccgtcggccaaggcccaagccctgcatgacgtggtcaacgctgctggcctgcag
tgggtggaaaccgatccggaccgccacgcacagacccagctgcgcatcgccgcggcgcat
acgccggtccgcctgggccgcgagcgcaagccggtcgcgtccgtttccaacgagccgctg
gttcaggtcgaaacgcgccactaa
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