Azoarcus sp. KH32C: AZKH_1123
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Entry
AZKH_1123 CDS
T02502
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aza
Azoarcus sp. KH32C
Pathway
aza03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aza00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AZKH_1123 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aza03019
]
AZKH_1123 (rhlE)
Enzymes [BR:
aza01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AZKH_1123 (rhlE)
Messenger RNA biogenesis [BR:
aza03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AZKH_1123 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAL23453
UniProt:
H0PYB1
LinkDB
All DBs
Position
complement(1223668..1225110)
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AA seq
480 aa
AA seq
DB search
MSFADLGLIPELLRAVADTGYTTPTPIQQQAIPVVLAGRDIMGGAQTGTGKTAGFTLPLL
NRLARHASASTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRTTCIYGGVDMKPQ
IQELRNGVEIVVATPGRLLDHVQQKTIVLNQVEMLVLDEADRMLDMGFIPDIRRILDLLP
ASRQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNTVSETITHVVHPVSAGLKRNLLVH
LLRHEPDTQALVFVATKLACGRLAHFLERHDIAADAIHGDKGQSQRTEALEAFKSGKLRV
LVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRKGRAVSLVSSEEKHLLA
DIEKLIKLQIPQEDVAGFDPEPDFHESGSRGKHGRKGSHAETEPARENGRGPRTGSPAKG
GDSARRKKSTIAADGFDFSKPYQPTGAAGSLDSASADHLSPLPKRNARPIPFLLGGLGRK
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgccgacctcgggttgattcccgagttgctacgcgcggtagccgacaccggt
tatacgacccccactccgatccagcagcaggccatccccgtcgtgctggccgggcgcgac
atcatgggcggtgcgcagaccggtaccggcaagaccgcaggcttcacgctgccgctgctg
aaccgcctcgcccgccacgccagcgcctccacgagccctgcccgccatccggtgcgtgcg
ttgatcctcgcgccgacacgtgagctcgcgatgcaggtgttcgaatcggtgaagacctac
agcaagtacgtgccgctgcgcacgacctgcatctatggcggcgtcgacatgaagccgcag
atccaggagctgcgcaacggcgtcgagatcgtcgtcgcgacaccgggacggctcctcgac
cacgtgcagcagaagaccatcgtcctgaaccaggtcgagatgctggtgctggacgaagcc
gatcgcatgctggacatgggcttcatcccggacatccgccgcatcctcgacctgctgccg
gcgagccgccagagcctgctgttctcggcgaccttctcggacgagatcaagaagctcgcc
gaccagatgctgaaggagccgcagctgatcgaggtcgcgcggcgcaatacggtgtcggag
acgatcacccacgtcgtgcacccggtctcggcgggcctcaagcgcaacctgctggtgcat
ctgctgcgccacgagcctgacacccaggcgctggtgttcgtcgcgaccaagctcgcctgc
ggccgtctcgcgcacttccttgagcgccatgacattgccgccgatgcgatccatggcgac
aaggggcagtcgcagcgcaccgaggcgctggaagccttcaagtccggcaaactgcgcgtg
ctcgtcgcgaccgacgtcgcggcgcgcgggctggacatcgacgacctgccctcggtgatc
aacttcgagctgccacataccgccgaagactacgtgcaccgcatcgggcgcaccggccgc
gccggtcgcaagggtcgcgcggtgtcgctggtgagcagcgaggaaaagcacctgctggcc
gacatcgaaaagctcatcaagctgcagattccgcaggaagacgtcgccggattcgacccg
gagccggatttccacgaaagcggtagccgtggcaagcacggtcgcaagggcagccatgcg
gagaccgaaccggcgcgcgagaatgggcgcggaccgcgcacgggatcgccggccaagggc
ggagactccgcacgtcgcaagaaatcgacgatcgcggccgacggattcgatttcagcaag
ccatatcaaccgacaggcgccgccggcagcctcgacagcgcctccgcggaccatctgtcg
ccgctgcccaagcgcaatgcgcgcccgatccccttcctgctcggcggactgggacgaaaa
taa
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