Azoarcus sp. DN11: CDA09_20085
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Entry
CDA09_20085 CDS
T05691
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
azd
Azoarcus sp. DN11
Pathway
azd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
azd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDA09_20085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
azd03019
]
CDA09_20085
Enzymes [BR:
azd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDA09_20085
Messenger RNA biogenesis [BR:
azd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDA09_20085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
DUF3025
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
AYH45652
LinkDB
All DBs
Position
4325448..4326971
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AA seq
507 aa
AA seq
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MNSEASFASLGLAEPLLRAISESGYTRPTPIQAQAIPLVLAGGDLLAAAQTGTGKTAGFT
LPLLHRLSTTPAAAKPGRPRCLILTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINP
QIAALKKRVDILVATPGRLLDHAGQKTIDLSGVEILVLDEADRMLDMGFIRDIRKVLALL
PKQRQNLLFSATFSDEIRSLANGLLNNPGCVEVARRNTTTELVEQSVYLVPQKQKRDLLV
HLVKEHDWHQVLVFTRTKHGANRLAEYLGKHGIPAAAIHGNKSQSARTKALSQFKDNSLP
VLVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGKAISLVDSEEKPYL
ASIERLIKRTIDRTPVPAFVTHAPDPGDNDRPPRDPRQSGRRNDGRAPRQPQSERPAPRA
QSHAPNRQPVRQGEAAGAGNRPARPEGQNGRNPRAGEPNAKRPQDAGANRAPRSAEAPRQ
PAQRPEAGRRPAPRAALFNAKPGSRGD
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atcaattccgaagcatccttcgccagtctcggactggccgaacctcttttgcgcgccatt
tccgagtccggctacacgcggccgacgccgatccaggcacaggcgattccgctggtgctg
gccggcggcgacctgctcgccgcggcccagaccggcaccggcaagaccgccggcttcacg
ctgccgctgctgcaccgcctgtcgacgacgcccgcggcggcgaaacccggccgcccgcgc
tgcctgatcctcaccccgacgcgcgagctcgcggcgcaggtcgaggaatcggtgcagacc
tacggcaagcacctgccgctgacctcgatggtcatgttcggcggcgtgaacatcaatccg
cagatcgcagcactgaagaagcgcgtcgacatcctcgtcgcgacgccggggcgcctgctc
gaccacgccgggcagaaaacgatcgacctgtcgggcgtcgagatcctcgtcctcgacgaa
gccgaccgcatgctcgacatgggtttcatccgcgacatccgcaaggtgctcgcgctgctg
ccgaaacagcgccagaacctgttgttctcggcgaccttctcggacgagatccgttcgctc
gccaacggcctgctcaacaatccgggctgcgtcgaagtcgcgcgccgcaacacgaccacc
gagctcgtcgagcagtcggtgtatctggtgccgcagaagcagaagcgcgacctgctggtg
catctggtgaaggagcacgactggcaccaggtgctggtgttcacgcgcaccaagcacggg
gcgaaccggctcgccgaatacctcggcaagcacggcatcccggccgccgcgatccatggc
aacaagagccaatcggcgcgcaccaaggcgctgtcgcagttcaaggacaactcgctgccg
gtgctcgtcgcgaccgacatcgcggcgcgcggcctggatatcgaccagttgccgcaggtc
gtgaacttcgagctgccgaacgtgccggaagactacgtgcaccgcatcggccgcaccggc
cgcgcgggcgcgaccggcaaggcgatctccctggtcgacagcgaggagaagccctacctg
gcgtcgatcgagcgcctcatcaagcgcaccattgatcgcacccccgtgccggccttcgtg
acgcacgcccccgacccgggcgacaacgaccgcccgccacgcgacccgcgccagtccggc
cgccgtaacgacggccgcgcaccgcgccagccgcagtcggaacgcccggcgccccgtgcg
caaagccatgcgccgaaccgccaaccggtacggcagggcgaagcggccggagcggggaac
cgtccagcgcgccccgaagggcagaacggccgcaatccgcgcgccggcgagccgaacgcg
aagcgcccgcaggacgccggcgcaaaccgcgccccgcgatcggcggaagcaccgcgtcag
cccgcgcagcgtccggaggcgggccgtcgtcccgcgccgcgcgcggcgctcttcaacgcc
aaaccgggcagccgcggcgactga
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