Bacillus sp. 1NLA3E: B1NLA3E_13055
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Entry
B1NLA3E_13055 CDS
T02643
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
baci
Bacillus sp. 1NLA3E
Pathway
baci03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
baci00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
B1NLA3E_13055 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
baci03400
]
B1NLA3E_13055 (ligD)
Enzymes [BR:
baci01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
B1NLA3E_13055 (ligD)
DNA repair and recombination proteins [BR:
baci03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
B1NLA3E_13055 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AGK54359
UniProt:
N0AT41
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All DBs
Position
2876741..2878609
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AA seq
622 aa
AA seq
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MILFQQKRKVKLMKPMLPSLTFNIPEGVDWYYEVKYDGFRAILEWNVNNLTLTSRNGKPL
LALFPEIELFLLRNKEKFAPFLPLALDGELVFLENPYKADFGSIQVRGRMRSQKKILEKA
ELQPCFLLVFDVLHLQGVALKGKPYIKRKGELTKLFTAVDLPLVPSENNSKLVQMIPSKQ
NFQSVWDNVVLYDGEGIVAKQELNLWEDGKRSISWLKYKNWKYVSCFITAYDKSNGYFYI
GVFKGGVVYPIGLFLFGLTPEEKQALVRIIKDNQIREDAQFVYVPPAICVEVKYLEVYEK
QLREPHFHQFRFDLKAEDCIIENFIYNQKNLPLDIEITHPEKPIWETPPVTKIDYIHYLQ
EVSPYILPFLKDRALTVIRHPHGMFGEPFYQKNRPDYAPDYVHSFHRENIDYIVCNNFKT
LLWLGNQLAIEFHIPFQTINNAFPSEIVLDLDPPSKKDFHLAIKAALLIKEVLDHLNLIS
FVKTSGNKGLQIYLPLQENQVSYDDTRLFTAFIAEYLVSKDPDSFTIERMKKNRGNRLYV
DYVQHGEGKTIIAPYSLRGTGPATVATPLYWHEVTDKLTAETFNITNMVERIRKVGDPFQ
TYFEAKKIQNIKPILEFLAKKR
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
ttgattctgtttcagcaaaaaaggaaggtaaaattaatgaaaccaatgttgccaagtcta
actttcaacattcctgaaggtgttgattggtattatgaagtgaaatatgacggctttagg
gctattttagaatggaatgtaaataacctaacgcttacaagcagaaatggaaaacctctc
cttgcgcttttccctgaaattgaactttttttattaagaaataaagaaaaattcgctcct
tttcttccacttgcattagatggagagctcgttttcttggaaaatccttataaagcagat
tttggctcaattcaagtacgaggtagaatgcgctctcaaaaaaaaatccttgagaaagct
gaattacaaccatgttttttattggtgtttgatgtattgcacttgcaaggtgttgcatta
aaagggaaaccatacataaagaggaaaggtgagttaactaaactgtttacagcggtagac
ttaccacttgtgccaagcgaaaataactcaaagcttgtgcagatgattccctcgaaacaa
aactttcaatcggtttgggataatgtggtcctttatgacggggaaggcatcgtggcaaaa
caggaactgaatctctgggaagacgggaaacggtcaatctcttggttgaaatacaaaaat
tggaaatatgtttcatgttttataaccgcatatgataaatcgaatggctatttttatatt
ggggtttttaaaggtggcgtggtttacccaattggccttttcctttttggccttacacct
gaagagaaacaagcgcttgtccgaattatcaaggacaatcagattcgcgaagatgctcaa
tttgtatacgtgccgcctgcaatttgtgtggaggttaaatatttagaagtatatgaaaaa
cagcttagagagccacactttcatcaattccgatttgatttgaaggctgaagattgtatt
attgaaaactttatatataatcaaaaaaacttaccactagacattgaaatcacccatcct
gagaaaccaatttgggagacaccgcccgtaacaaaaatagattatattcattatttacag
gaagtttctccttatatactcccctttttaaaggacagagccttaactgtcattcgtcat
ccccatggtatgtttggcgagcctttttatcaaaaaaatcgaccggattatgcaccagat
tatgtgcattcttttcatagggaaaatattgactatattgtttgcaacaactttaagacg
ttgctttggcttggtaatcaacttgcaatcgaatttcatattccttttcaaactattaat
aacgcttttccaagtgaaattgtccttgatttggatcctccttcaaaaaaagattttcat
ttagctataaaggctgctttattaataaaagaggttcttgatcacttaaaccttattagt
ttcgttaaaacctcgggcaacaaagggttacaaatttatttgccgctccaagagaatcaa
gttagttatgatgatacaagattgtttactgcttttattgctgaatatttagtatcaaaa
gatccggattcttttacaattgaaagaatgaagaaaaaccgtggcaatagactttatgtt
gattatgttcaacatggagaaggaaaaacgataatcgctccttattctttaagagggaca
gggccggcaactgtagcgaccccgctttattggcatgaagtgaccgacaagcttacagca
gaaacctttaacatcactaacatggtagagcggattaggaaagttggagacccttttcaa
acctattttgaagcaaaaaaaatccaaaacattaaacccattctagagttcttagcaaaa
aagagataa
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