Borrelia afzelii (Maryland): BafPKo_0520
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Entry
BafPKo_0520 CDS
T02093
Name
(GenBank) uncharacterized HDIG domain protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bafz
Borrelia afzelii (Maryland)
Pathway
bafz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bafz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BafPKo_0520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bafz03019
]
BafPKo_0520
Messenger RNA biogenesis [BR:
bafz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BafPKo_0520
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KhpA-B_KH
KH_2
HDOD
DUF5957
Motif
Other DBs
NCBI-ProteinID:
AEL69728
UniProt:
Q0SN03
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All DBs
Position
511620..513152
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AA seq
510 aa
AA seq
DB search
MMYIIFSSIFAGFILGFLIRVFLGRLSLLDLEKNLTKVRVESQLEIENERRQIIANAKSQ
MLKEKNQQDRDIRDRKNEIVNLEKRLLQREETLDKRISALDKQQSRVDFKIKEFEQKEKV
IREKEADLVKRLENISGLTREDARKIVIEKVEHESRRDAQVIINKSEQEAQLLADKVAKD
ILVSTMQRIVTEVSSEFTVASVELPNDEMKGRIIGKEGRNIRALETLIGADIIIDDTPEA
VVISCFDPIRKELAKRTLERLVTDGRIHPARIEEVVYNVTNEINSIIQEEGEKVVFDLNI
HGLDKRLIRGLGRLYFRSSYGQNVLSHSKETAIIGEILAKEMKLDPIVVKRACLLHDIGK
GMESISDNSEGHAITGAELAQSCGESEIVVNAIAAHHNEVKPESLEAIVVQIADAISASR
PGARRESLNNYINRLKRLEDIAYSFEGVQKCYAIQAGREVRIIVDNALINDEKSILLARD
IAKKIEAEMRYPGKIKVTIIRETRVIEYAR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgatgtatattattttttcttctatttttgctggctttatattaggatttttaataaga
gtttttttaggtagattatctttattagatttagaaaaaaatctgacaaaagtaagggta
gaatcacaattagagatagaaaatgaaagaaggcaaattattgctaatgcaaaatctcaa
atgcttaaagaaaaaaaccagcaagatagggatataagggataggaaaaatgagattgtt
aatctggaaaaaagattattacaaagagaagaaaccttagataagagaatatctgctctt
gataaacaacaatccagagttgattttaaaattaaagaatttgaacaaaaagaaaaagta
ataagagaaaaagaggccgatcttgttaaaagattggagaatatttctggtcttacaaga
gaagatgcaagaaaaattgtaattgaaaaagttgagcatgagtctagaagagatgctcaa
gttattatcaataaaagtgaacaggaggctcagttattagcggataaagtcgcaaaagat
attttagtatctactatgcagcgtattgttacagaggtaagttcagagtttacagtagct
tctgttgaattacctaatgacgagatgaaggggaggattataggtaaagaaggacgcaat
attagagctcttgagactttaataggagccgatatcattattgatgatactcctgaagct
gttgttatatcttgctttgatccaataagaaaagaacttgccaagaggaccttagaaaga
cttgttacagatggtaggattcatcctgctaggattgaagaagttgtgtataatgttacc
aatgagataaatagcattattcaagaagaaggtgagaaagtagtttttgatcttaatata
catggacttgataagagacttattagagggttgggaaggctttattttagaagtagttat
gggcaaaatgttttaagccattccaaagaaactgctataataggagaaattttagctaaa
gagatgaaattagaccctattgtagtaaaaagagcatgtcttttacatgatattgggaaa
ggtatggaaagtatttctgataatagcgagggacatgctattactggtgctgaacttgct
caaagttgcggagagagtgaaattgttgttaatgctattgctgcgcatcataatgaagtt
aagcccgagagtcttgaggctattgttgttcaaatagcagatgccatctcagcatctcgc
cctggagcaaggcgagaaagtttaaataactatataaatagacttaaaagacttgaagat
attgcttatagttttgaaggtgttcaaaaatgttatgcgattcaagctggtcgtgaagtt
agaattattgttgacaatgctttaattaatgatgaaaaatcaattttacttgcaagagat
attgccaagaagatagaagctgaaatgagatatcctggaaaaattaaagttacaattatt
cgtgaaactagagttattgaatatgcaagatag
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