Bacillus velezensis UCMB5036: BAM5036_3542
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Entry
BAM5036_3542 CDS
T02480
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
baml
Bacillus velezensis UCMB5036
Pathway
baml03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAM5036_3542 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baml03019
]
BAM5036_3542 (deaD)
03009 Ribosome biogenesis [BR:
baml03009
]
BAM5036_3542 (deaD)
Enzymes [BR:
baml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BAM5036_3542 (deaD)
Messenger RNA biogenesis [BR:
baml03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BAM5036_3542 (deaD)
Ribosome biogenesis [BR:
baml03009
]
Prokaryotic type
rRNA helicases
BAM5036_3542 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
SWI2_SNF2
UvrD-helicase
Helicase_RecD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
CCP23547
LinkDB
All DBs
Position
complement(3716488..3717927)
Genome browser
AA seq
479 aa
AA seq
DB search
MNEFNEYAISPEIRRALNGLQYTEPTEVQRRVIPAALQKKDLVVKSQTGSGKTAAFGIPI
CELAEWEENKPQALILTPTRELAAQIKEDITNIGRFKRIKATAVFGKASFDKQKTELKQK
SHVVAGTPGRVLDHIEKGTLPLERLAYVVIDEADEMLNMGFIEQVEAIIQHLPKNRVTML
FSATLPDDVEKLSRTYMKDPELIEVKAEGLTTKDIEHFVTRTEEEDKTSLLRDVLITENP
DSCIIFCRTKERVIQLTDELDRLGYPCDKIHGGMVQEDRFDVMNEFKRGEFRYLIATDVA
ARGIDIENISLVINYDIPLEKESYVHRTGRTGRAGHRGLAVTFVTPSESRFLNDIETYIG
FRIQKREAPSEKETAERKAAFAEKLNARPDVKTDKSEQLNKDIMKLYFNGGKKKKLRAVD
FVGTIAKIDGVSADDIGIITILDNASYVEILNGKGPHVLDIMKNTTVKGKKLKVHKAKK
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtttaatgaatatgcgatcagccccgagatccgacgggcgctgaatggcttg
caatacaccgagccgactgaagtgcagcggcgcgtcatccccgccgcgctgcaaaaaaaa
gacctcgtcgtcaaatcgcagacgggcagcggcaaaaccgcggctttcggcattccgatc
tgcgagcttgcggaatgggaggaaaacaaaccgcaggcgctgattttaacgccgacccgc
gagcttgcggcgcagattaaagaagatatcacgaatatcggccgtttcaaacggataaaa
gccacggcggttttcggaaaagcttcttttgacaaacagaaaaccgaactgaagcaaaaa
agccacgtcgttgccggaacgccggggcgtgtgcttgatcatatagaaaaagggacgctg
ccgcttgaacggctggcgtatgtggtgattgacgaagcggatgaaatgctgaatatggga
tttattgaacaggtggaagccatcattcagcatctgccgaaaaacagagtcaccatgctg
ttttcagcgacgctgccggatgacgtcgagaagctgagccgcacatatatgaaagaccct
gaattgattgaagtaaaagcggaaggcctgacgacaaaagacattgagcattttgtcacc
agaacagaagaagaggacaaaacatctttgctgcgtgatgtcctgatcaccgaaaacccg
gacagctgcatcatattctgccggacaaaagaaagggtcatccagttaaccgatgagctg
gacaggctgggctacccttgcgataaaattcacggcggcatggtgcaggaagaccgcttt
gacgtcatgaatgaattcaagcgcggcgagttccgctatctcattgcgaccgatgttgcc
gccagaggaattgatattgaaaacatcagcctcgtcatcaattatgatatcccgcttgaa
aaagaaagctatgtgcaccgcaccggccgaacggggcgcgccggacaccgcggactggcc
gttacgtttgtgacgccttctgaatcgcggttcctgaatgacattgagacatatatcggt
ttccgcatccaaaagcgggaggcgccgtccgagaaagaaacagcggaacggaaagcggct
tttgcggaaaaactgaacgcccgccccgatgtcaaaacagacaaaagcgaacagttaaac
aaagacatcatgaagctgtactttaacggcgggaaaaagaaaaaactcagagcggtcgat
tttgtcggaacgattgcgaaaatcgacggcgtttcagccgatgatatcgggattatcacg
attctggacaacgcatcgtacgtcgagattctgaacggcaaaggcccgcacgttcttgac
atcatgaaaaatacgacggtcaaaggcaaaaaactgaaagtccataaagctaagaaataa
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