Bacillus velezensis TrigoCor1448: AJ82_07560
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Entry
AJ82_07560 CDS
T03161
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bamt
Bacillus velezensis TrigoCor1448
Pathway
bamt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bamt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AJ82_07560 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bamt03400
]
AJ82_07560 (ligD)
Enzymes [BR:
bamt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AJ82_07560 (ligD)
DNA repair and recombination proteins [BR:
bamt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AJ82_07560 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DUF2532
Motif
Other DBs
NCBI-ProteinID:
AHK48881
LinkDB
All DBs
Position
complement(1321473..1323308)
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AA seq
611 aa
AA seq
DB search
MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLTNQFPEITVFA
ARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLKRTEAIESTADRRPCRFLAFD
LLVLEGAGTVSLPYVKRKRALSKLLKEANLPACPHHLAEEAIQYIPEHTEFDALWEKVVR
HDGEGIVAKRASSGWAENKRSPDWQKYKHMKTANVLLTGFNPKNGYVTASVLKDGTAVPI
ASVSHGMQAEEKNAVRTIMETHGKKQKSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ
FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVKMSDFLMPFLK
DRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHEHIVCSSIPSLLWLANQLALE
FHVPFQTVHSERPAEIVIDLDPPSRNDFPMAVEAAHVLKQLFDSFSITSFPKLSGNKGIQ
LYIPLSPEAFTYEETRAFTMLIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTI
IAPYSTRGNELGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL
SIVLEQIKRKS
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggtgctgacgatgcagccgattttgacctctgtaccgcctgaaggcagtgagtggcgc
tatgaggtaaagtatgacggattccgctgtcttctccgcatagacgaaagcggcgttaca
ttaaccagcagaaacggacagacgctgacgaatcaatttccggaaatcacggtttttgcg
gctcggtgttttcagcacatgaaagacaggttccccattacgcttgacggagagcttgtc
tatttaatcaatccgtacagagcggactttgagcatcttcaaatccgcggacgtttaaaa
cggacggaagcaattgaaagcaccgctgatagacggccgtgccgctttctggcatttgat
ctcctcgttctggaaggcgccggcaccgtctcattaccgtatgtgaaacggaagcgtgcc
ctttccaaactgcttaaagaagcaaatcttcccgcctgccctcatcacttagcggaagaa
gcgattcaatacattccggaacacactgaatttgatgcgctttgggagaaggtcgtccgc
catgacggagaaggtatcgtagcaaaaagggcttccagcggctgggcggaaaataaacgg
tctcccgactggcaaaagtataaacatatgaaaacggcaaatgtgctattaaccgggttt
aatccgaagaacgggtatgtaacggcctctgttttaaaagacggcaccgccgtcccgatc
gcgtccgtttcccacggcatgcaggcggaagaaaaaaacgccgtcagaaccattatggag
acccacggaaaaaaacaaaaaagcggcgagtatacacttgagccttctatctgcatgacc
gtgcagtatttaaccatattgcaggacacgctgcgtgaagtatcttttgtgtcttttcag
tttgaaatggattggacggaatgcacgtatcagcagcttatccttcactctaaaacgctg
ccgccgaagctgcagttcacaagcctggataagattgtttttaaaaaacgtgaaaaaacg
aaagcagatttccttagttatatggtaaaaatgagcgattttctgatgccctttcttaaa
gatcgggccgtcacggtgatccgttatccgcacggcgcgcctggcgaatctttttttcaa
aaaaacaaaccggactacacgccggactttgtctcaagcgtgtttgacgggagccatgag
cacatcgtatgcagcagcataccgtcacttttatggctggctaatcagctggcgcttgaa
tttcacgttccgtttcagacagtgcattctgaaaggcccgcggaaatcgtcattgatctt
gatcctccgtcaaggaatgattttcctatggcagtggaggctgcgcatgtgctgaaacag
ctgtttgactcattcagcattacgtcattcccgaagctctccggaaataaaggcattcag
ctctacatcccgctttcaccggaagcattcacctatgaagaaacccgtgcgttcacaatg
ctcatcgccgattattgcgtcaggacgcggccggatctttttacgacagagcggtttatc
aaaaaccgaaacggcaggctctacctagattacttgcagcatgccgaagggaaaaccatt
atcgccccctattcgacccggggcaacgaattgggaacggttgcggctcccctttattgg
agcgaagtcaactcctctttaacacctgatgattatacgatcgatacagtagtgaaccgc
gtcaggacagagggagatccgttttatgatttttaccggaatccgcaggacggcccgctt
tcaatcgtgcttgagcaaatcaagagaaagagctga
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