Candidatus Bipolaricaulis anaerobius: BARAN1_0929
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Entry
BARAN1_0929 CDS
T05525
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
3.6.4.13
]
Organism
bana
Candidatus Bipolaricaulis anaerobius
Pathway
bana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BARAN1_0929 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bana03019
]
BARAN1_0929 (rhlE)
Messenger RNA biogenesis [BR:
bana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BARAN1_0929 (rhlE)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
AAA_19
Flavi_DEAD
Str_synth
Motif
Other DBs
NCBI-ProteinID:
SQD92953
UniProt:
A0A2X3K7G6
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All DBs
Position
BARAN1:complement(927128..928315)
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AA seq
395 aa
AA seq
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MDFRSFAFHPRILSGIEAAGYTHPTPIQQQAIPVILEGHDMIGVAQTGTGKTAAFMLPIL
HRLAERPGDHVRAVVLAPTRELAEQIHQATRLLGRDIGVRSVALYGGVKKWPQAAALRRG
VDVVIACPGRFLDLDGDRALDLSHVEVLVLDEADRMCDMGFLPDIRRILALLPNDRQTLF
FSATMPPEIRRLAQGILRAPVTVQVDAGVPAKTVSHAFYPITEGRKRDLLLALLQGPATG
RVLVFTRTKSRAQSLASFLSGAGLNVAAIEGDMSQRDRQGALDGFRSGEYEILVATDVAA
RGIDVEDITHVINFDLPDSVDAYTHRVGRTGRLAKTGHALSLSAPADRLLRSWVEKAVGK
PIESRRLPGFDYGGAVAGEARPGSSRFARRARLRR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
gtggattttagaagtttcgcgtttcacccccggatcctgtccgggatcgaggccgctggc
tacacccaccctactccgatccaacagcaggcgatccccgtcatcctggaggggcacgac
atgatcggcgtcgcccagaccggaaccgggaagacggcggcgttcatgctccccatcctc
caccgcctcgcagagcggccgggggaccacgtgcgcgcggtcgtgctcgccccgacgcgg
gagctcgccgagcagatccaccaggcgacccgcctgctcgggagggacatcggcgttcgc
agtgtcgccctctacggcggggtgaagaagtggccccaggcggccgcgctccggcggggc
gtggacgtcgtgatcgcgtgccccgggcggttcctcgatctcgatggggatcgggcgctc
gacctctcccatgtcgaggtgctcgtcctcgacgaggccgaccggatgtgcgacatgggg
ttcctccccgacatccggcgcatcctcgccctcctgcccaacgatcggcagaccctgttc
ttctcggcaacgatgccccccgagatccgccgcctggcgcaggggatcctccgcgctccg
gtcacggtgcaggtggacgcgggtgtcccggcgaagacggtgtcccacgcgttctacccg
atcaccgaggggcgaaagcgggacctcctcctcgccctcctccagggcccggcgacgggg
cgggtgctcgtgttcacgcgcaccaagagccgcgcccagagccttgcctcgttcctgtcc
ggtgcggggctcaacgtggcggcgatcgagggtgacatgtcgcaacgggaccggcaggga
gcactcgacgggttccggtccggggagtacgagatcctcgttgccaccgatgtcgcggcg
cgggggattgacgtggaggacatcacgcacgtcatcaacttcgacctgcccgatagtgtg
gacgcctacacccaccgcgtgggccgcacggggcgactcgccaagaccggccacgccctc
agtttgtccgcgccggcggaccgcctcctgcggagctgggtggagaaggcggtggggaag
ccgatcgagtcgcgacggcttcccgggttcgactacggcggggcggtggcaggtgaggcg
cggcctggctcatcccggttcgcccgccgggcgcgcctccgccggtag
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