Bifidobacterium animalis subsp. lactis ATCC 27673: BLAC_03495
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Entry
BLAC_03495 CDS
T02862
Name
(GenBank) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
banl
Bifidobacterium animalis subsp. lactis ATCC 27673
Pathway
banl03030
DNA replication
banl03410
Base excision repair
banl03420
Nucleotide excision repair
banl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
banl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BLAC_03495
03410 Base excision repair
BLAC_03495
03420 Nucleotide excision repair
BLAC_03495
03430 Mismatch repair
BLAC_03495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
banl03032
]
BLAC_03495
03400 DNA repair and recombination proteins [BR:
banl03400
]
BLAC_03495
Enzymes [BR:
banl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BLAC_03495
DNA replication proteins [BR:
banl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BLAC_03495
DNA repair and recombination proteins [BR:
banl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BLAC_03495
NER (nucleotide excision repair)
GGR (global genome repair) factors
BLAC_03495
MMR (mismatch excision repair)
DNA ligase
BLAC_03495
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BLAC_03495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AGW84900
LinkDB
All DBs
Position
824148..826739
Genome browser
AA seq
863 aa
AA seq
DB search
MEDALIADEQLDRYPIGSDPWIDSLRDIDSDAMELDDLDVSKLNVEQAVRLWSRLSAWVE
GDQVAYYVKDAPLSSDAAYDARMNCLKRLESEFPQLDTPQSPTHRVGGTFSNDFTAVRHP
SQMMSLDDVFSFEELHAWYDGVRKDLEWPEDKPLPMTCEVKIDGLALNLIYRNGVLTQGL
TRGDGVTGEDITMNVRTIHSIPTNLDGPEGDIPDMVEIRGEVFMRWDDFHKLNEANEDAG
RPPFANPRNAAAGSLRQKDPRITAQRHLSFYAHGIGELVWGSGKPVDVADEVRNQSDAYT
MYRKWGVPISPHNREVTDFDQILDMIEYYGEHRGDIEHALDGIVVKVDDLALQRRLGSTS
RAPRWAIAYKYPPEEVNTKLLNIVVQVGRTGRVTPVAILNPVYVAGSTVSRTTLHNAYEV
KRKGILIGDTVVVRKAGDVIPELVGPVIAKREGHEQDLREFVMPTRCPSCDTVLRYEKEG
DKDLRCPNSESCPAQLAERVINLAARKAFDIEHLGDQSAVALTNPEDNRPDSVEAYAPGV
REIVVEPGEEPAPYLAPSGLELPPIQEPVLTSEANLFDLEASDLRDVYVWREAQIIEVRR
HVDSHGKERKVRHRLGGSGLWHREPAFWSGVKDAPLKKDANRKTVKDPEGNPEYEVKPDA
VIVGHGRNGRPRIEEPTENTRKMLDEIEKAKHTDLSRVLVALSIRHVGPPTAFTLAKHFK
TLDALADASAEELEQIDGIGAEIADSIATFFEEARMPGNWRGRVLEAWKAAGVGMSTHDE
GLPQTLEGKSVVVTGTLEHFSRESAKEAIERRGGKASGSVSRKTDWVVVGANPGSKATKA
EELGIPIIDEQQFDTLLATGDVQ
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgcattgattgcagacgagcagctcgacaggtatccgattggttcggatccg
tggattgactcattgcgtgacatcgacagtgatgcgatggaacttgatgatctcgacgtg
tcgaagctcaatgtagagcaggcggtgcggctgtggtcacgtctgagtgcttgggtggag
ggcgatcaggtggcctattacgtcaaggacgccccgctttcctccgatgcagcgtacgat
gcgcgcatgaattgcctcaaacgactggagtcggagttcccccagcttgacacgcctcag
tcaccgacccatcgggtaggtggcacattctcgaacgacttcacggcggtgcggcacccc
tcccagatgatgagcctcgatgatgtgttctccttcgaggaactgcatgcctggtacgat
ggcgttcgcaaggacctcgaatggccggaagacaagccgttgcccatgacctgcgaggtg
aagatagacggtctggctctgaatctcatctaccgcaacggagttctgacgcagggactc
acccgtggtgatggggtcactggcgaagacatcacgatgaatgtgcgcacgatacactcc
atccccaccaatctggatggcccggagggcgatattcccgatatggtggagattcgcggc
gaggtgttcatgcggtgggatgattttcacaagctcaacgaggcgaacgaagatgcgggc
agaccaccgttcgccaatccacgcaatgcggccgcgggatcgctacgccagaaggatccg
cgcatcaccgcgcagcggcatctgagtttctatgcacatggcatcggcgaactggtatgg
gggtcgggcaagccggtggatgtggccgacgaggtgaggaaccagtcggatgcctacacg
atgtaccgcaaatggggggtgccgatttcgccccataaccgcgaggtcaccgacttcgac
cagattctcgacatgatcgaatactacggcgagcaccggggtgacatcgagcatgcgctc
gacggcattgtggtcaaagtggacgacctcgcgttgcaacgcagactgggcagcacctca
cgcgcgccgcgttgggccatcgcctacaaatacccgcccgaggaggtcaacaccaagctc
ctcaatattgtggtgcaggtcgggcgcacgggcagagtcacaccggtggccatactgaac
ccggtgtatgtggccggatccacggtgtcgcgcaccacgctgcacaatgcatacgaggtc
aaacgcaaaggcattctcatcggcgatacggtggtagtgcgcaaggccggcgatgtgatc
cccgaactggtcggcccagtaatcgccaaacgcgaagggcatgaacaggacctacgcgag
ttcgtcatgcctacacgatgcccatcctgtgacaccgtgttgcggtatgagaaggaggga
gacaaggacctgcgatgcccgaattcggaaagctgcccggcccagctcgccgaacgtgtg
atcaatctggcggcccgcaaggcattcgacattgagcatctgggtgaccaaagcgcggtg
gcgctgacgaaccccgaagacaacaggccggactcggtggaagcctacgcccccggcgtg
cgtgagatcgtggtggaaccaggcgaggagccggcaccgtatctggctccgagcgggctg
gaacttccgcccatccaggagcccgtactcaccagtgaagcgaatttgttcgacctcgaa
gcaagcgacctccgggatgtctatgtgtggcgtgaagcgcagatcatcgaagtgcgcagg
cacgtggattcgcatggcaaggagaggaaggtgcgccatcgtctcggcggttccggcctg
tggcatagggagccggctttctggtccggggtcaaggatgccccgctgaagaaggacgcg
aatcgcaagacggtgaaggaccccgaaggcaaccccgaatacgaggtcaaaccggatgcc
gtgattgtgggccatggcaggaatgggcggccgcgcatcgaggaacccaccgagaacacc
aggaagatgctcgatgagatcgagaaagccaagcataccgatctgagccgcgtcctcgta
gcgctctccattcgccatgtgggcccaccgaccgcattcacgctggccaagcactttaag
acactcgatgcgctggccgacgccagtgccgaggaactcgaacagatcgacggcataggc
gcggagatcgccgattccattgcgacattcttcgaggaggctcgcatgccgggcaattgg
cgcggccgtgtgctggaggcgtggaaagccgccggtgtgggcatgagcacgcatgacgag
ggtcttcctcagacgttggaaggcaagagcgtggtggtcaccggcacccttgagcatttc
tcccgcgaatcggctaaggaggccatcgaacgccgtggcggcaaggcctccggatcggtg
agcaggaagacggattgggtggtcgtcggagccaatcccggttcgaaggccacgaaggcc
gaggaactgggcatcccgatcatcgacgagcaacagttcgacactttgctcgccaccggc
gacgtgcaatga
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