Buchnera aphidicola W106 (Myzus persicae): BUMPW106_CDS00552
Help
Entry
BUMPW106_CDS00552 CDS
T03023
Symbol
rpob
Name
(GenBank) Rpob
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bapw
Buchnera aphidicola W106 (Myzus persicae)
Pathway
bapw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bapw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BUMPW106_CDS00552 (rpob)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bapw03021
]
BUMPW106_CDS00552 (rpob)
03400 DNA repair and recombination proteins [BR:
bapw03400
]
BUMPW106_CDS00552 (rpob)
Enzymes [BR:
bapw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BUMPW106_CDS00552 (rpob)
Transcription machinery [BR:
bapw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BUMPW106_CDS00552 (rpob)
DNA repair and recombination proteins [BR:
bapw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BUMPW106_CDS00552 (rpob)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
iRhom1-2_N
Motif
Other DBs
NCBI-ProteinID:
AHG60904
LinkDB
All DBs
Position
complement(41090..45118)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLNSFKKFIEPDLDGQQGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEAIFDVKECQIRGATYSAPLRVRLRLVIYERDILEATVKDIKEQ
EVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFYIDKNTIQLE
LVPERLRGETASFNIQKDGKIYVEKGRRITARHIQELKNYKIKSITVPVEYILGRIISKN
YLDKKTGEIIVFANTELSLEGLEKLIKSGFNCIETLFTNDLDHGPYISETLRIDSAHDRM
SALIEIYRVMRPGEPPTKEATENLFENLFFCEDRYDLSSVGRMKFNRSLLRKEIEGSSTL
NKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKERLS
IGDLETLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYSQTNSYGFLETPYRKVRDGFIT
KEINYLSAIEEGNYIIAQANTNIDKNGFFTDDLVTCRHKGESSLFNRNQVNYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLVGTGMERAVAVDSGVTVVAKR
SGFIQYVDASRIVIKVDETEMHSEEAGIDIYNLTKYTRSNQNTCINQQPCVNLGEKIKKG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCIS
RDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDMQLKQAKKDL
TEEFKIFESSLFLNIKKTLISFDIKIEKLNKLPYEKWLSIEIKQKDQKKEIEKLAKQHHE
LKEEFNKKIEIKRRKITQGDDLSPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDEYGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGNKINHMLKTQEKISN
LRKFIQQAFDLGDNLRQKIDLDTFSNEEILCLANNLKNGMPIATPVFDGAQENEIKKLLE
FANLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELESE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttacaccgaaaaaaaacgtattcgtaaagattttggtaaacgccctcaa
gttttagatataccatatcttctttcaattcaactgaattcttttaaaaaatttattgaa
ccagatttagatggtcaacaaggattagaagcagcttttcgttctgtttttcctattcaa
agttataatggaaattctgaacttcaatatgttagttatcgtttaggagaagcaattttt
gatgtaaaagaatgccaaataagaggagcaacttattcagcaccattaagagtcagatta
cgtctggtaatttatgaacgagatatattagaagctactgttaaagatattaaagaacaa
gaagtttatatgggtgaaataccattaatgacaaacaatggtacatttatcataaatggg
acagaaagagtagtagtttctcagctacatcgtagtcctggagtcttttttgatagtgat
aaaggtaaaacacattcttcaggaaaagttctctataatgctcgtattattccttatcga
ggatcttggttagattttgaatttgatcctaaagataatctatttgtaagaattgataga
cgtcgtaaattaccagtaagtattattttaagagcgctaaactataatacagaagaaata
ttaaatatattttttgaaaaaaatatcttttacatagataaaaatactattcagttagaa
ttagttcctgaaagactacgtggtgaaactgcatcatttaatattcaaaaagatggaaaa
atatatgtagaaaaaggtcgtcgtattaccgctagacatattcaagaattaaaaaattat
aaaatcaaatcgattactgttccagtagaatacattttaggaagaattatatctaaaaat
tatttagataaaaaaacaggtgaaataattgtttttgctaatactgaactatctttagaa
gggctcgaaaaacttataaaatcaggttttaattgtattgaaacattatttactaatgat
ttagatcatggtccgtatatatcagaaacattacggatagactctgctcatgatcgtatg
agtgctttaatagaaatctaccgagtgatgagacctggagaaccacctacgaaagaagca
acagaaaatctatttgaaaatttatttttttgtgaagatcgatatgatttatcttctgtc
ggtagaatgaaatttaacagatctcttttacgtaaagaaattgaaggatcaagtactcta
aataaagaagatattattgatgttattaaaaaaataattgatatccgtaatggaaaagga
gaagttgatgatattgatcatttaggaaatagacgtattagatcagttggagaaatggca
gaaaatcaatttagaattggtctagttagagttgaaagagcagttaaagaaagattgtca
attggtgatttagaaactctaatgccacaagatatgataaatgcaaaacctatatcagct
gctgtgaaagaattttttggttctagtcaattatcacaatttatggatcaaaataatcct
ttatcagaaattacacataaaagaagaatttcagctttaggattaggtggtttaactaga
gaaagagcgggatttgaagttcgagatgttcatcctactcactatggccgagtatgtcct
atagaaacaccagaaggtcctaatatcggattaatcaattctttatctgtatattctcaa
actaattcatacggatttttagaaacaccttatagaaaagtacgagacggattcatcact
aaagaaattaattacttatctgctatagaagaaggtaattatattattgctcaagctaat
actaatattgataaaaatggattttttactgatgatttagtaacttgtcgacataaaggc
gaatctagtttatttaaccgcaatcaagtgaattatatggatgtttctactcagcaaatt
gtatctgtgggtgcatctttaataccttttctagaacatgatgatgccaatagagcatta
atgggtgcaaatatgcaacgtcaagcagtccctactttgaaaacagataaaccgttagtt
ggaacaggcatggaaagagcagtagcagtagattcaggcgtaacagttgttgctaaaaga
agcggttttattcaatatgtagatgcttctcgtatagttattaaagttgatgaaacagaa
atgcattcagaagaagctggaatagatatttataatttaaccaaatatactcggtctaat
caaaatacttgtattaaccaacaaccatgtgtcaatctaggtgaaaaaatcaaaaaaggt
gatgttttagcagatggtccatccactgatttaggagaacttgcattaggacaaaacatg
agagtggcctttatgccttggaatggatataattttgaagattctattttagtatcagaa
agagtagttcaagaagatcgttttactactattcacattcaggaactatcatgtatatct
cgcgatactaaactaggagcagaagaaataagttcagatatcccaaatgtaggagaagca
gctttatctaaattagatgaatcaggtattgtatacattggagccgaagtgactggagga
gatatattagtaggtaaagtgacacctaaaggagaaacacaactaacaccagaagaaaaa
ttattacgtgctatttttggtgaaaaagcatcagatgtaaaagattcttcattacgagtt
cctaatggagtatcaggaaccgtaatagatgtgcaaatatttactagagatggtgtaaaa
aaagataaaagagctttagaaattgaagatatgcaacttaaacaagcgaaaaaagattta
acagaagaatttaaaatatttgaatctagtctatttcttaatattaaaaaaactcttata
tcttttgatattaaaatagaaaaattaaataaattaccttatgaaaaatggctttcaata
gaaataaaacaaaaagatcaaaaaaaagaaattgaaaagcttgcaaaacaacatcatgaa
ttaaaagaagaatttaataaaaagattgaaataaaacgtcgaaaaatcacacaaggtgat
gatttatctccaggtgttttaaaaatagtaaaagtatatttagctgttaaacgtcaaatt
caacctggtgataaaatggcaggaagacatggaaataaaggagtaatatctaaaatcaat
ccgattgaagatatgccttatgacgaatatggtatcccagtagatattgttttaaatcca
ttaggtgttccttctcgtatgaatattggacaaatattagaaacacatctaggcatggcg
gcaaaaggtattggtaacaaaattaatcatatgttgaaaacacaagaaaaaatatctaat
ttacgaaaatttatacaacaagcttttgatttaggtgacaatttacgtcaaaaaatagat
ttagatactttttcaaatgaagaaatactatgcctagcaaataatttaaaaaatggcatg
cctattgctactcctgtattcgatggtgcacaagaaaatgagataaagaaacttttagaa
tttgctaatttacctacttctggtcaaattacactttttgatggaagaacaggagaaaaa
tttgaacgaccagtgacagttggttatatgtatatgttaaaattaaatcatttagtagat
gataagatgcatgctcgttctactggttcttatagcttagtaactcaacaaccattaggt
ggaaaagctcaatttggtggacaacgttttggtgaaatggaagtttgggcattagaagca
tatggagcttcttatacattacaagaaatgttaactgtaaaatctgatgacgtcaatgga
agaaccaaaatgtataaaaacatagtagatggaaatcatcaaatggaacctggtatgcca
gaatcttttaatgtattgttaaaagaaattaggtcattaggtattaatattgaattagaa
agtgaataa
DBGET
integrated database retrieval system
