Bartonella sp. JB63: BJB63x_005860
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Entry
BJB63x_005860 CDS
T05552
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
barj
Bartonella sp. JB63
Pathway
barj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
barj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJB63x_005860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
barj03019
]
BJB63x_005860
03009 Ribosome biogenesis [BR:
barj03009
]
BJB63x_005860
Enzymes [BR:
barj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BJB63x_005860
Messenger RNA biogenesis [BR:
barj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BJB63x_005860
Ribosome biogenesis [BR:
barj03009
]
Prokaryotic type
rRNA processing factors
BJB63x_005860
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AQX29273
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All DBs
Position
complement(664120..666747)
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AA seq
875 aa
AA seq
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MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARVSRIEPSLQAAFVE
YGGNRHGFLTFAEIHPDYYQIPIADRLALLEEEKAAINESYDDDPIEETTQNKKRLKTTK
KDKSNSVMATDIEIDIISEEIIADDTEEILDFSNDCIEMVGSEDALEELPTYRRKQGRQY
KIQEVIKRRQILLIQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQD
RKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAPCLI
HEESNLIKRSIRDLYSKDINEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAH
NDIETQLDKILHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAE
EIARQLRLRDLSGLIVIDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMS
RQRIRVSVLESTTQPCPHCAGTGSIRSESSIALHVVRSIEEYLLRNSQYNIIVRTPVETA
LYVLNHKRNILVNLEMRFGLNINIEADNNIGTQHFAISKGSIAKGKSFSSAVIEDNDKKE
IENAVSITSKTNENTTSVENKKRRQRKKNQIESNNDSILSNVHKNDTQNDDARRRGRRRG
RGGGWRNQNNNYQFPIPYAEPVGDFAKQALEEIKAEYRQYNIPAAEPVGFNKDTRYKRHL
ISTQQKAHIAIKSTKHNVKSSDSVKNKWNLAKDKNIITLKQEEFVEEKLVTKFNQQSKIK
EINEFTNEVNEKISINTKKSKLRARRKAETEKSVQTTKITEQEPVIKKIVEQIPPTVITA
PTEPVVTSSGVETETDKKTERVGWWKRKGFFSKNK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaatgcttatcgatgcctctcatccagaggaaacacgtgttgttgtcgtt
cacgataataaaattgaagaacttgactttgagtcagaacataaaaaacaacttaaaggg
aatatttatctagcacgtgtttcgcgtatagaaccatcacttcaagctgcttttgttgaa
tatggtggtaaccgtcatggttttttaacctttgcagaaattcatcctgattattatcaa
attcctattgccgatcgtcttgctcttcttgaagaagagaaggctgctattaatgaaagc
tatgatgatgatcccattgaagaaacaacacaaaacaaaaaacgcttaaagacaacaaaa
aaagataaaagcaatagtgttatggcaacggatattgaaattgatatcatatctgaagaa
attatagctgatgataccgaagaaatacttgatttttctaatgattgcattgaaatggtt
gggtcagaagatgcacttgaagaattacctacctatcgccgtaaacagggacgtcaatat
aaaattcaagaggtaattaaacgtcgtcaaattttattaatccaagtcattaaagaagaa
cgtggtaataaaggtgcagcacttacgacttatttgtcattagctggtcgctattctgtt
ttaatgcctaacacagctcgagggggtggtatttcacggaagatcactaatatacaagat
cgcaaacgtcttaaagaaattgtaaaagaattagcagttccaaaaggtatgggagttatt
ttgcgaacagctggagcgaatagaacaaaagctgaaattaaacgtgattatgaatacctc
atgcggttatgggatactattcgcaccttgacacttgaatcaacagcgccatgtctaatt
catgaagaaagtaaccttataaagcgttctattcgcgatctttatagtaaagatattaat
gaaattcttgttgcaggtgatcaaggataccgtgaagctaaagactttatgcgcatgctt
atgccaagtcatgcaaaagttgttcaaccctatcgtaatcctattcctatttttgcacat
aatgatatcgagactcagcttgataaaattttgcatccacaggttagtttgaaatctgga
ggctatcttgtaattaatcaaacagaagcactcgtcgctattgatgtaaactctggtcgt
tctactaaagaacattctgttgaaaaaacagcattacaaaccaatcttgaagctgcagaa
gaaatagcgcgtcaattacgtttacgtgatctctcaggtttaattgtgattgattttatt
gatatgctagaaacccgtaatattaagcttgtagaaaaaaaattgaaagattgtttaaag
aacgatcgcgctcgtattcaggttggtcatatttcacattttggccttatggaaatgagt
cgtcaacgtattcgtgtatctgttctagaaagcactacacaaccttgcccgcattgcgct
ggaactggaagtatacgctctgaatcatcgatcgctttacatgttgtgcgttctattgaa
gagtatcttctccgaaactcacagtataatattattgtacgcacacccgtagagacagca
ctctatgtgctaaatcataaacgcaatattcttgttaatttagagatgcgttttgggctt
aatattaatattgaagcagacaataatattggaacgcagcattttgctatttctaaaggc
tcaatagcaaagggaaaatctttttcttcggcagttatcgaggataatgataaaaaagaa
attgaaaatgctgtctcaattacaagcaaaactaatgaaaatacaacatcagttgaaaat
aaaaaacgacgtcagcgtaaaaaaaaccaaattgaatctaataacgatagcattctttct
aatgttcataaaaatgacactcaaaatgatgatgcccgtcgtcgtggacgtcgtcgtgga
cgcggcggaggttggcgtaatcagaataataattatcagtttcctattccttatgcagaa
cctgttggagatttcgccaagcaagctttagaagaaattaaagcagaatatcgccagtat
aatattccagcagctgagcccgttggatttaataaagatacccgttataagaggcactta
atcagcacacagcagaaagctcatattgctatcaaatctacaaagcataatgtgaagtct
tcagattctgtaaaaaataaatggaatcttgcaaaggacaaaaatataataacattaaaa
caagaagaatttgttgaagaaaaattagtcaccaaatttaatcagcagtctaaaataaaa
gaaataaatgaattcacaaatgaagtgaatgaaaaaatttctataaatacaaaaaaatca
aagctaagggcacgaagaaaagcagagactgagaaatctgttcaaacgactaaaataaca
gaacaagaacctgtaatcaaaaaaattgttgaacaaattcctcctacagttataacagca
cctactgagcctgttgtgacctcatcaggggtagaaactgaaactgataaaaaaactgag
cgtgttggttggtggaaacgcaaaggttttttctcaaaaaataagtaa
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