Bartonella krasnovii OE 1-1: D1092_02510
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Entry
D1092_02510 CDS
T06421
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
barn
Bartonella krasnovii OE 1-1
Pathway
barn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
barn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
D1092_02510 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
barn03021
]
D1092_02510 (rpoB)
03400 DNA repair and recombination proteins [BR:
barn03400
]
D1092_02510 (rpoB)
Enzymes [BR:
barn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
D1092_02510 (rpoB)
Transcription machinery [BR:
barn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
D1092_02510 (rpoB)
DNA repair and recombination proteins [BR:
barn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
D1092_02510 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QEE11902
UniProt:
A0A5B9D0H9
LinkDB
All DBs
Position
611857..616008
Genome browser
AA seq
1383 aa
AA seq
DB search
MAQTHAMMSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQ
AVFKSVFPISDFSGTAMLEFVGYEFDLPKFDVEECRQRDLTYAAPLKVILRLIVFDVDED
TGSKDIKDIKEQGVYMGDMPLMTANGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSG
KLLFAARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYDKV
TYERDGEGWRVPYSVDRFKGMKLISDLIDADSGEVVAEAGKKLTVRTAKSLAEKGLKSVK
VSEDDLLGCYLAEDIVNYETGEIYLEAGDEIDEKVLKILLDVSADQINILDIDHMNIGAY
IRNTLKVDKNESRQDALFDIYRVMRPGEPPTIDTAEAMFHSLFFDPERYDLSAVGRVKMN
LRMDLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRI
GLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
IESPYRKIIDGKVTKEVIYLSAMEEAKHYVAQANSSLDSEGRFIEEFVVCRHAGEVLMAP
RDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMES
VVARDSGAAVSAKRSGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCINQ
RPLVHVGDRVEKGDIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDV
FTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMA
IEREEIERLAKDRDDEQSILDRNVYARLTDMLTGKVAVEGPKGFSESKKLDSTVMGHYPR
SQWWQFAVEDEKLQNEIEALRKQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFV
AVKRKIQPGDKMAGRHGNKGVVSRILPVEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE
THLGWACAGMGKKIGDLLELYQETGDILPLRQRIESLMPDDNHNEPVRQYDNESLYKLAL
QMKKGVSIATPVFDGAHESDINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARELIAQRVLSDT
PEQ
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggctcagactcacgcaatgatgtctcaattcaatggtcgtaagcgggtacgcaaattt
ttcggtaagattcctgaagtggcagagatgccgaatcttattgaggttcaaaaagcgtca
tatgatcagtttctcatgattgaggaaccgaaaggtggacgaccagatgaaggtttgcaa
gctgtttttaaatcggtatttcctatttccgatttttccggtacagctatgcttgagttt
gttggttatgaatttgatttaccaaaatttgatgtggaagaatgtcgtcaacgtgattta
acttatgcagctccattaaaggtgatattgcgtttgattgtttttgatgttgatgaggat
actggctccaaagatatcaaagacattaaagagcagggcgtttatatgggcgatatgcct
ttaatgaccgccaatggtacctttattgttaatggtacggagcgtgttattgtttctcag
atgcaccgttctcctggtgtcttttttgatcatgataagggcaagtcccattcatcggga
aaacttctttttgctgctcgtgttattccatatcgtggttcttggctggatattgaattt
gatgctaaggacatcatctatgcgcgtattgatcggcggcgcaaaatacctgttaccagt
ctgttaatggcattaggtatggatgcctcagacattttatcgacattttatgataaagtg
acttatgagcgtgatggagaagggtggcgtgttccttattctgttgatcgctttaaagga
atgaagctcatttctgaccttatagatgcagatagtggtgaagttgttgcggaagctggg
aaaaaactaacagttcgtactgcgaagtctttagcagaaaaaggcctcaagtcggttaaa
gttagtgaagatgatttattagggtgttatctcgctgaagatatcgtcaattacgagaca
ggtgagatttaccttgaagctggtgatgaaattgacgaaaaagtattaaagattttgctt
gatgttagtgctgatcaaatcaatattcttgatattgatcatatgaatattggcgcctat
atccgcaatactttaaaagtggataaaaatgaaagtcgacaggatgcattatttgatatt
taccgagtgatgcgtccaggtgagcccccaacaattgatacagcggaagcaatgtttcat
tcattgttttttgatccagagcgttatgatctttcagctgttggacgtgttaagatgaat
ttgcgtatggatcttgattgtccagataccgttcgcgttttacgtcaagaggatattctt
gctgttgttaagatgttggttgaattgcgtgatggtcgtggtgaaattgatgatattgat
aatctcggtaatcgtcgtgttcgttccgttggggagttgatggagaatcaatatcgcatt
ggtttgctgcgcatggagcgtgcgataaaagaacgtatgtcatcagttgaaattgataca
gttatgccgcaggatttaatcaatgcaaaacctgctgctgcagctgttcgcgagtttttt
gggtcttcacagttgtcgcaatttatggatcaaaccaatcctttgtcagaaatcacccat
aagcgtcgcctttctgctcttggtccagggggattgactcgtgagcgtgcggggtttgaa
gttcgtgacgtccatcctacgcattatggtcgtatttgtccgattgaaacaccagaaggc
cctaatatcggtcttattaactccttagcaacatttgcacgggttaacaagtatggcttt
attgaaagcccatatcgtaaaattattgatggtaaagtcaccaaagaagttatttatctt
tcagcgatggaagaagcaaagcattatgttgctcaagcgaactcttcattagatagtgaa
ggccgttttatagaagagtttgttgtttgccgtcatgctggtgaagttttaatggcgccg
cgcgatcatgttgatttaatggatgtttcaccaaaacagttggtttctgtggcagccgca
ctaattccgtttttggaaaatgatgatgcgaatcgtgcgcttatgggatcgaacatgcaa
cgtcaggcagttcctcttgtgcgcgctgaagcgccatttgttgggacggggatggagtcc
gttgttgcccgcgattcaggagctgcggtgagcgcaaaacggagtggtattgttgatcaa
gtcgatgcgacccgtattgttattcgtgcaacagaagatttagatccttcaaaatcaggc
gttgatatttatcgtttacaaaaatttcagcgttctaatcagtccacttgtattaatcag
cggcctcttgtacatgttggtgatcgggtagaaaagggtgatatcattgcagatgggcca
tctacagatcttggtgatttagctcttggtcggaatgttcttgtcgcctttatgccttgg
aatggatataactacgaagattccattttgttgtctgagcgcattgttgcagatgatgtg
tttacttcaattcatattgaggagtttgaagttgctgcacgtgatacaaaacttggtcca
gaggaaattacccgcgatattccaaatgttgcagaagaagcattaaggaatcttgacgaa
gctggcattatttatattggtgctgaagttcaaccaggtgatattttggttggcaagatt
acaccaaagggtgaaagtcccatgacgccggaagaaaagcttctgcgtgcaatttttggt
gaaaaggcatcagatgttcgcgacacttctatgcgtatgcctcctggaacgtttggtact
gttgttgaggttcgcgtttttaatcgccatggagtggaaaaagatgagcgtgctatggca
attgaacgtgaagaaattgagcgtttagcaaaagatcgtgatgatgaacagtcgattctt
gatcgcaatgtttatgcgcgtcttactgatatgttaacaggtaaagtcgctgtagaaggt
ccgaaaggcttttcggagagcaaaaagcttgatagtacggtaatggggcattatccacgt
tcgcagtggtggcaatttgctgttgaggatgaaaagcttcaaaatgaaattgaagctttg
cgcaagcaatatgatgaatcaaaagaagcattacaacgtcgctttatggataaagttgaa
aaggtccaaagaggtgatgaaatgcctcctggtgtcatgaaaatggtaaaggtttttgtg
gctgtgaagcgcaaaatccaaccgggtgataagatggcgggacgtcacggaaataagggg
gttgtctcacgtattctgcccgtagaagatatgccatttcttgaagatgggacgcatgca
gatattgttttaaatccacttggtgtgccgagtcgtatgaatgttggtcaaattcttgag
acgcaccttggttgggcatgtgccgggatgggtaaaaagattggtgatttgttagaatta
tatcaagagactggtgatatacttcctttacgtcaacgtattgaaagtcttatgcctgat
gataatcataacgaacctgtgcgtcagtatgataacgaaagtctttacaagttggcactt
cagatgaagaaaggggtttcaattgcaacgcctgtttttgatggagcccatgagtctgat
atcaatatgatgctggaagatgctggtctagatagttcagggcaggttacgctttatgat
ggtcgtacgggagagccctttgatcggccagtaacggtagggtatatttacatgttgaaa
ttgcaccatcttgttgatgataagattcatgcacgttctattggtccctactcacttgtt
acgcagcagccattgggaggtaaggcacagtttggtggtcaacgttttggtgaaatggag
gtttgggctcttgaagcttatggtgcagcatatactttgcaggagatgttgacagtaaaa
tcggatgatgtcgctggtcggacgaaagtctatgaagcgattgtacgtggtgatgataca
tttgaagctgggatacctgagagctttaatgtgttggttaaagaaatgcgttcactcgct
cttaatgtagagcttgatgatgcgcgtgaacttattgcacagcgtgttttatctgatacg
ccagaacaataa
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