Burkholderiales bacterium GJ-E10: E1O_17920
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Entry
E1O_17920 CDS
T03654
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bbag
Burkholderiales bacterium GJ-E10
Pathway
bbag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E1O_17920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbag03019
]
E1O_17920
03009 Ribosome biogenesis [BR:
bbag03009
]
E1O_17920
Enzymes [BR:
bbag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E1O_17920
Messenger RNA biogenesis [BR:
bbag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E1O_17920
Ribosome biogenesis [BR:
bbag03009
]
Prokaryotic type
rRNA processing factors
E1O_17920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAP88923
UniProt:
A0A0A1H3K6
LinkDB
All DBs
Position
1917109..1919997
Genome browser
AA seq
962 aa
AA seq
DB search
MKRMLFNATHAEQLRVAIVDGQKLLDLDIETSGREQRKSNIYKGIITRVEPSLEACFVDY
GEERHGFLPFKEISRQYFKAGLDVGRARIQDAVAEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDALDKLDLPSGMSVIARTAGIGRAVEELQ
WDLKYLLQLWKAITDAVALVKAPELIYLESSLVIRAIRDYFNPDIGEILIDTEDVYEQAK
TFVDLVMPDVSARVKRYRDDVPLFSRFQIEHQIESAHSRTVSLPSGGAIVIDHTEALVAI
DVNSAQATRGSDIEETATRTNLEAADEAARQLRLRDLGGLIVIDFIDMEEGRNQRAVEQR
LKDALHHDRARVQMGKISRFGLMELSRQRLRPALSEGSHITCPRCNGVGQVRDTESSALH
ILRILQEEAMKESTAAVHAQVPVDVATYLLNEKRAEIAKLEARLRVSILLIPNKYLETPH
YHIERLRHDDERLDNPKASYSRVVEPPTEEPYTTASREPRNRRQVAVVKGIVPETPAPVI
ATAEAAPTVAQPAPTAAPAHHPADRSLWGRIRSWFGVKDEVAVPAAQPASPKGAAAAEPA
GEPAPARKEPRRERGERSERNGERGGRRGERPARGTRGDAERTARGEPRKRDGARRDVET
EAAAVTTAAEAVPPVEESREAAATQAATEERTGRRRSRRGRGGRGRDGEQAAGTAANEVE
SADTVLAAGEPAPEVIAGPAVDAPEEAGGEAGPEGDAAAGSPDESGSPEKRRRRRGRRGR
GGRTGERASEGDNGEAPLGAESAVESGVEPEPQEHVTAPLAEVPVEPATLPPAVEIQPAA
LATQPLPQPAAEAPAAAEAPAVVAAPAAVAAEIAPEPKEAEALPAAPEATTPVAIPTPMT
VEEITPTLHSAGIELAQTDPAKLAQAQARIAEEDKPVRRGRPRPVRAASAEEPLVQIETQ
GD
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgttgttcaatgcgacgcacgcggagcagttgcgcgtagcgatcgtcgat
ggtcaaaaactgctcgacctggacatcgaaaccagcggacgcgagcaacgcaagtccaat
atctacaaaggcatcatcacgcgggtcgagcccagcctcgaagcgtgtttcgtcgattac
ggcgaagaacggcacggattcctgccgttcaaggaaatttcgcgccaatacttcaaggcc
gggctcgatgtcggccgcgcccgcatccaggatgcggtagcggaaggccaggaactgatc
gtccaggtcgaaaaggaggaacgcggcaacaagggcgccgccctcaccaccttcatttcc
ctggccggccgctatctggtgctgatgcccaacaacccccggggcggcggcgtttcgcga
cgcgtcgagggcgaggatcgccaggaactgcgcgacgcgctcgacaagctcgatctgccg
tcgggcatgagcgtgatcgcccgcaccgccggaatcggccgcgccgtcgaagagctgcag
tgggacctgaaatatctcctgcagctgtggaaggccatcaccgatgcggtcgccctggtc
aaggcgcccgaactcatctacctcgagtcgagcctggtgatccgggcgatccgcgactat
ttcaacccggacatcggcgagatcctgatcgacaccgaagacgtgtacgaacaggcaaag
accttcgtcgacttggtgatgccggacgtctcggcgcgcgtcaagcgctaccgcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaagcgcgcattcgcgcacg
gtttccctgccctcgggcggcgccatcgtcatcgaccacaccgaggcgctggtcgccatc
gacgtcaactccgcacaggcgacgcgcggctcggacatcgaggagacagccacccgcacc
aacctcgaagccgcggacgaagcggcgcggcagctgcgtctgcgcgacctgggcggactg
atcgtcatcgacttcatcgacatggaggaaggccgaaaccagcgtgccgtggaacagcgc
ctcaaggatgcgctccaccacgaccgcgcccgcgtgcagatgggcaagatctcgcgcttc
ggcctcatggaactgtcgcgccagcggctgcgcccggcgctgagcgaaggcagccacatc
acctgcccgcgctgcaacggggtcggccaggtgcgcgataccgaaagttccgcgctgcac
atcctgcgcatcctgcaggaggaggcgatgaaggaatcgacggccgccgtgcatgcgcag
gttccggtggacgtcgcaacctatctcctgaacgagaagcgcgcggaaatcgccaagctg
gaagcccggttgcgcgtgtcgatcctcctgattccgaacaagtacctcgaaaccccccac
tatcacatcgagcggctgcgacacgacgacgagcgcctggacaaccccaaggccagctac
agccgcgtcgtcgagccgccgacggaggagccctataccaccgcttcgcgcgaaccgcgc
aaccggcggcaggtcgccgtcgtgaagggcatcgttcccgagacgccggcaccggtcatt
gcgacggccgaagccgcgccgacggtggcacagcccgccccgaccgcggcgccggcccac
catccggcggatcgttccctctgggggcggatccgcagctggttcggcgtcaaggacgaa
gtggcggtgcccgcggcccaacccgcgtcaccgaagggagccgctgcggccgaacccgcc
ggcgaaccggcaccggcccgcaaggagccgcgccgggagcggggggaacgcagtgaacga
aacggcgagcgcggtggccgccggggcgagcgccccgcacgcggcacccggggcgacgcc
gagcgcacggcgcgcggagagccccgcaagcgcgatggcgcccgccgcgacgtcgaaacc
gaagccgcggccgtcaccaccgcggcggaggccgtgcccccggtcgaggaaagccgcgag
gccgccgcaacgcaggctgcgacggaagaacggaccggccgtcgccgcagccgccgtggg
cgcggcggtcggggacgcgacggagagcaggccgcaggcacagcggcaaacgaggtcgaa
tccgcggacaccgtccttgcggcgggagaacccgctccggaagtcatcgccgggccggcc
gtcgacgcgccggaagaagccgggggcgaagccggtccggaaggggatgccgccgccggc
agcccggacgagtcgggcagcccggagaagcgccgacgccgtcgcggtcgccgcggccgc
ggaggacgtaccggcgagcgcgcctcggaaggcgacaacggggaagcgccgctcggtgcc
gaatcggctgtcgaatccggtgtcgaacccgagccgcaggagcatgtcaccgctcccttg
gcggaggtgccggtcgaacctgccacgctgccgccggcggtcgaaatccagccggctgcg
ctggcaacgcaaccgctgccgcaacccgccgccgaggcgcccgccgctgcggaagcgcct
gccgtggtagcggcgccggccgcggtggcggcggagatcgcccccgagcccaaggaggcg
gaagccctccccgcggccccggaagcgaccacacccgtggcgatcccgacgccgatgacc
gtggaggagatcactcccacgctgcattcggcgggaatcgaacttgcgcaaaccgacccg
gcaaaacttgcccaggcccaggcccggattgcggaagaggacaagccggtacggcgcggc
cgcccccgccccgtgcgtgctgcgtcggccgaggaaccgctcgtgcagatcgagacgcag
ggcgactga
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