Bdellovibrio bacteriovorus Tiberius: Bdt_2206
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Entry
Bdt_2206 CDS
T02356
Symbol
lig
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbat
Bdellovibrio bacteriovorus Tiberius
Pathway
bbat03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bdt_2206 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbat03400
]
Bdt_2206 (lig)
Enzymes [BR:
bbat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bdt_2206 (lig)
DNA repair and recombination proteins [BR:
bbat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bdt_2206 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFY01891
UniProt:
K7YPY2
LinkDB
All DBs
Position
complement(2309053..2311377)
Genome browser
AA seq
774 aa
AA seq
DB search
MPLKDYHQKRDFKKTREPKGQTRSKTKKQSKDQLMFVVQEHHASHLHYDFRLEWQGVLKS
WAVPKGPSLDPHLKRLAVEVEDHPLEYGNFEGVIPEKQYGAGQVYIWDTGVWIPKGSAAA
GFKKGHLEFELKGKRLKGTWDLIRTRLQGRQTQWLLVKREDAYAKAGYEAPLIGAKTTSR
RIHSKEAFHFVKPMLALLVDEPPHSKEWIHEVKWDGYRIQAHVHGTSAKLYTRAGHDWSG
KMTSVAHDVSGLNVQSAVLDGEVVVLDSKGLSHFQKLQNYFESDPDQKLTYIVFDLLMLN
GEDLRDRPLKERRKKLKEILKGKRRGRLRLSQEIKLSKGSWGKLQKQGLEGVISKKTDSL
YISGRKGEWVKSKFLNRQEFVIGGYVPGKGSRSDFGALLLGVYEKGRLRFVGKVGTGFNQ
KNISSLKRQLDKIKVAKKPFTAGDPPQKDAIWVKPQLLAEVRFANWTHGMHLRAPVFVEL
REDKPAPDVTSDALMLTSPDKVLYGAEGITKLEVAEYYIAIAERMRPYLENRLLALVRCP
EGSAGKCFFQKHLNAKAEAIAIFEKDDALYVKDVRGLLELVQMGGYEIHGRNSRSEAPAK
PDQFVLDLDPGSGVPWEEVVAAALLFKKDLEALGLRSFVKLSGGKGLHIHVPFKPGPSWD
EVKRFTHALAQAWEDRYPDRFVSKMSKKIRHGKIFIDYLRNSKGSTSVLPYSLRARDKSS
VALPVAWNHLKKYESGDAVSLKKALQILKSGQDPWANYFARAPVLPIKKTRSAS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgccgttaaaggactatcatcagaaaagggactttaagaaaacccgcgaaccgaaaggg
caaacgcgttcgaaaacaaaaaagcagagcaaagatcagttgatgtttgtcgtgcaggaa
catcatgcctcacatttgcactatgattttcggctggaatggcagggggtattgaaaagc
tgggctgtgccaaaaggtcccagcctggatcctcatctgaaacgccttgctgtcgaagtg
gaagatcatcccctggaatacggaaattttgaaggcgtgattcccgaaaaacaatacggg
gcgggtcaggtgtatatctgggataccggtgtttggataccgaaaggcagtgcggcggca
ggcttcaagaaaggccatcttgagttcgaactgaaaggcaaaagactgaaaggcacctgg
gatttgattcgcacgcgactgcagggacggcaaactcagtggcttttggtcaagcgtgag
gacgcttatgcaaaagcaggctatgaagctccgctgattggggcgaaaaccacgtcccgg
cgtattcattccaaagaagcctttcactttgtgaagcccatgctggcgctgctggtggat
gaacccccacacagcaaagaatggatccacgaagtcaaatgggacggctatcgcattcag
gcccacgttcatggcaccagcgcgaagctttacacccgcgccgggcatgactggtccgga
aaaatgacctctgtcgcgcatgatgtgagcggattgaatgttcagtccgcagtgctggac
ggcgaggtcgtggtcctggacagtaagggtctgagtcatttccaaaagctgcaaaattac
tttgaatccgatccggatcaaaagctgacttacatcgtttttgatttactgatgcttaac
ggagaggatctgcgcgatcgtccgctgaaagagcggcgtaagaagcttaaggaaatatta
aaaggaaaacgccgaggccgtctgcggctcagccaggaaatcaagcttagcaaaggttcg
tgggggaaattgcaaaagcaggggctggaaggggtgatttccaagaagaccgacagtctt
tatatttcaggacgaaaaggcgaatgggtgaagagcaagtttttaaaccggcaggaattc
gtcattggcgggtatgtcccgggtaaaggcagtcgcagcgattttggggcgttgctgttg
ggggtctatgaaaaaggccgtctgcgcttcgtcggcaaagtggggactggtttcaatcag
aaaaacatcagctctttaaagcgccaattggacaaaatcaaagttgcaaaaaaacctttt
acggccggtgatccgccccaaaaagacgccatctgggtaaagccgcagttgctggcagag
gtgcgctttgccaattggacccacggcatgcatttgcgggctccggtatttgtagagctt
cgcgaagacaagcctgcgccggacgtcacatccgatgcgctcatgctgaccagcccggat
aaagttttatacggagccgagggaatcaccaaacttgaagtggctgaatactacatcgcc
atcgcagagcgcatgcggccttatctggaaaaccggctgctggccctggtgcgctgtccg
gaaggatctgcggggaaatgtttttttcaaaagcatttgaatgcgaaggcggaggctatt
gcgatctttgaaaaagatgatgccttgtacgtaaaggatgtgcgcggacttttggagctg
gtgcagatgggtggttatgagattcatggccggaacagtcgatcggaagccccggcgaaa
ccggatcagttcgttctggatctggatccggggtcgggagtgccttgggaggaagttgtt
gccgcagctttgctatttaaaaaagatctggaagctctggggcttcgcagctttgtgaag
cttagcgggggcaaggggctgcatattcacgtgccgtttaagccgggaccttcctgggat
gaggtgaagcgttttacccatgctctggcccaagcctgggaggatcgttatccggatcgt
ttcgtcagtaaaatgtccaagaagattcgtcacgggaaaatatttattgattatcttaga
aactcaaaagggtcgaccagtgttctgccttattcactgcgggcgagggataaaagttca
gtagcgttgccggtggcgtggaatcatttgaaaaaatatgaaagcggggatgcggtcagc
ctgaagaaggctttgcagattctgaagagcggtcaagacccgtgggcgaattacttcgcc
cgggccccggtcttgccaattaagaaaactagaagtgcttcttaa
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