Bradyrhizobium betae: F8237_31220
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Entry
F8237_31220 CDS
T06368
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
bbet
Bradyrhizobium betae
Pathway
bbet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F8237_31220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbet03019
]
F8237_31220
Messenger RNA biogenesis [BR:
bbet03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F8237_31220
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RMMBL
RNase_J_C
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QFI76474
UniProt:
A0A5P6PF01
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Position
6472356..6474026
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AA seq
556 aa
AA seq
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MAKPDELVFAPLGGVGEIGMNLSIYGLGNRQQRSWLAVDLGVSFGDEEHLPGIDLIMPDI
SFLEKERKNLMGLVLTHAHEDHFGAIIDLWPKLKCPIYATQFSAALFEAKLAAERNAPKI
PVTVVPSGGRVDIGPFNVEFIPVAHSIPESHALAIHTSAGIVLHTGDWKIDPTPIIGRPT
DEKRLRELGDEGVLALIGDSTNAVRDGRSPSEAEVAKTITELVKAAKGRVAVTTFASNVA
RLKAVADAARAADREVVVVGRAMERVSQVARETGYLDGVQNFRSTDVYGHLPQDKVLALC
TGSQGEARAALARIANDDHPEITLNRGDCVIFSSRTIPGNEKAVGAIINNLILQGVEVIT
DRDHLVHVSGHPRRDELRDMIAWVRPQLLIPVHGEALHLHEHAKLARAAGVPRVLVIRNG
DLIKLGPGDPGVIGEVPSGRLYKDGTILEDSKSRAVVERRRMAFSGCAFVAFAMNAQGEL
VDDPEVDLVGIPDKNRAGEPFDDIVFDAVVSTIEGLPKARRRDPDALAESVRRAVRSVIN
EHWGKKPPCLVHVLTV
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctgatgaactggtatttgcgccgctcggcggcgtcggcgagatcggcatg
aacctgtcgatctacggcctcggcaaccgccaacagcggtcctggctcgcggtcgatctc
ggcgtctccttcggcgacgaggagcacctgccgggcatcgacctgatcatgcccgacatc
agcttcctggagaaggaacgcaagaacctgatggggctggtgctgacccacgcccatgag
gaccatttcggcgccatcatcgatctctggccgaagctgaaatgcccgatctatgcgacc
cagttcagcgcggcgctgttcgaggccaagcttgcggccgagcgtaacgcgccgaagatc
ccggtgacggtggtgccgtcgggcgggcgcgtcgatatcggcccgttcaacgtcgagttc
attccggtcgcgcattcgattccagagtcgcatgcgctggcgatccacacctcggccggc
atcgtgctgcacaccggcgactggaagatcgacccgaccccgatcattggccggccgacc
gacgaaaagcggctgcgcgaactgggcgacgagggcgtgctcgctttgatcggcgattcc
accaacgccgtgcgcgacggccgctcgccgtccgaagccgaggtcgccaagaccatcacg
gagctggtgaaggcggccaaaggccgtgtcgcagtcacgacctttgcctccaacgtcgcg
cgcctcaaggccgtcgccgatgcggcgcgcgccgccgaccgcgaggttgtcgtggtcggc
cgcgccatggagcgcgtgtcgcaggtcgcgcgcgagaccggttatctcgacggcgtgcag
aacttccgctcgaccgacgtctacggccatctgccgcaggacaaggtgctggcgctctgc
accggcagccagggcgaggcccgcgccgcgctggcgcgtatcgccaatgacgaccacccc
gagatcacgctgaaccgcggcgactgcgtgatcttctcctcgcgcaccattcccggcaac
gagaaggccgtcggcgcgatcatcaacaatctgatcctccagggcgtcgaggtcatcacc
gaccgcgatcatctggtccacgtctccggccatccgcgccgcgacgagctgcgcgacatg
atcgcctgggtcaggccgcagctcctgatccccgtccatggcgaggccctgcatctgcac
gagcatgccaagctcgcgcgcgccgccggcgtgccccgcgtgctggtcatccgcaacggc
gacctgatcaagctcggccccggcgatcccggcgtgatcggcgaggtgccttcgggccgt
ctctacaaggacggcacgattttggaggattccaagtcccgtgctgtggtcgagcgccgc
cgcatggcgttctccggctgtgccttcgtcgctttcgccatgaacgcgcagggcgagctc
gtcgacgatcccgaggtcgatctcgtcggcatccccgacaagaaccgggcgggcgagccc
ttcgacgacatcgtgttcgacgccgtggtctccaccatcgagggcctgccgaaggcccgt
cgccgcgatccggatgccttggccgagtcggtgcgacgcgctgtccggtccgtgatcaac
gaacattggggcaaaaagcccccctgtctggtacacgtcctgacagtgtag
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