Salisediminibacterium beveridgei: BBEV_3254
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Entry
BBEV_3254 CDS
T05114
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbev
Salisediminibacterium beveridgei
Pathway
bbev03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbev00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBEV_3254 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbev03021
]
BBEV_3254 (rpoB)
03400 DNA repair and recombination proteins [BR:
bbev03400
]
BBEV_3254 (rpoB)
Enzymes [BR:
bbev01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBEV_3254 (rpoB)
Transcription machinery [BR:
bbev03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBEV_3254 (rpoB)
DNA repair and recombination proteins [BR:
bbev03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBEV_3254 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AOM84569
UniProt:
A0A1D7QZZ9
LinkDB
All DBs
Position
complement(3455429..3458905)
Genome browser
AA seq
1158 aa
AA seq
DB search
MDLPNLIEIQTASYQWFLDEGVREMFQDISPISDFTGNLVLEFIDYSLGEPKYPVDESKE
RDVTYSAPLRVKVRLINQETGEVKEQEVFMGDFPLMTDTGTFVINGAERVIVSQLVRSPS
VYFNKKVDKNGKKGHTATVIPNRGAWLELETDAKDVVYCRIDRTRKIPATVLLRALGFGT
DQEIIDLLGEDEYLRNTLDKDNTDSSEKALLEIYERLRPGEPPTVESAKSLLDSRFFDPK
RYDLASVGRYKMNKKLHIKNRLFNQKLAETLIDPDTGEILAEEGTVIDRRVLDKLMPYLE
NNVGFDRINLQGGVINDEEVDIQSVLIYSQDPTAEEGEKIKVIANGNVPDTVKNITPADI
ISSVSYFFNLLHGVGNTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDTN
VITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGF
EVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYAKVNRFGFIETPYRKVNHETGIVSEKV
DYLTADEEDNYIVAQANAKLNEEGQFSDENIICRFRGENIIVPRDRVDYMDVSPKQVVSA
ATACIPFLENDDSNRALMGANMQRQAVPLLEPHSPLVGTGMEYVSAKDSGASVVAKNRGR
VEKVTAKFVDVRDLAEVDGKETEGNLKRYNFMKFERSNQGTCYNQRPIVSEGMIVDEGEI
LADGSSMEKGEMALGQNVLVGFMTWDGYNYEDAIILSERLVKDDVYTSIHIEEYESESRD
TKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDILVGKVTPKGVTELTAEERLL
HAIFGEKAREVRDTSLRAPHGGDGIVLDVKVFNREDGDELPPGVNQLVRAYIVQKRKINE
GDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLGVPSRMNIGQVLELHMGMAAR
QLGIHIATPVFDGAREEDVWETIEESGMARDGKTVLYDGRTGEPFDSRVSVGVMYMIKLA
HMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSD
DTIGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMDVKMLSSNDEEIDMLEHEDEE
ENTGEKLNLNLESGESNA
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggatcttccgaatttaatcgagatccagacagcttcatatcaatggttcctggatgaa
ggagttcgtgaaatgtttcaggatatttcaccaatttcggatttcaccggaaacctggtt
ctcgagtttattgattactcattgggagagccaaaatatccggttgatgaatctaaggag
cgggatgtaacatactcagcgccgctgcgcgtcaaagtccgattgattaatcaggaaaca
ggagaagtgaaggaacaggaagtctttatgggtgattttccactcatgacggatacaggt
acctttgtgattaatggtgccgaacgtgtcattgtttcccagcttgttcgttctccaagt
gtttacttcaacaaaaaggtcgacaagaatggtaagaaaggtcataccgcaacggtgata
ccgaaccgtggtgcatggctcgagcttgaaactgacgcaaaagacgttgtctattgccgc
attgaccggacccgtaagatcccggcaaccgttttgctcagagcgcttggatttggtact
gatcaggaaatcatcgatcttcttggtgaagatgaatacctacgcaacacactggataag
gacaatacagattcttccgagaaagcgctccttgaaatttatgagcggcttcgtccaggg
gaaccgccaaccgtagagagtgccaagagtctcctcgattcccggttctttgacccgaaa
aggtacgatctggccagtgtcggacgctacaaaatgaacaaaaaacttcatattaagaac
cgcctctttaaccagaagcttgcagaaacattgatcgatccggatacaggagaaattctt
gctgaagaaggcaccgtgattgaccgacgtgtgctcgacaagctgatgccatacctagag
aacaatgtcggttttgaccgcattaatctgcagggcggcgtgatcaatgatgaggaagtc
gacattcagtccgtactcatctattcacaggatccaacagctgaagaaggcgagaaaatc
aaggtcattgccaacgggaatgtccctgatactgttaagaacattacaccggcagacatt
atttcttctgtcagctacttctttaacctgttgcacggtgtaggaaacaccgatgacatt
gaccacctcggtaaccggcgccttcgctctgtgggtgaactcctgcagaaccagttccgc
atcggtttatcccggatggaacgtgtcgttcgtgaacgcatgtccattcaggacaccaat
gtgatcacaccgcaggccctgatcaatatcaggcctgtgattgcctccatcaaagaattc
ttcggaagttctcagctttcccagtttatggatcagacaaatccgctggctgagctgacg
cataaacgccgtctgtctgcacttggacccggtggtttaacacgtgaacgtgccggtttt
gaagtacgtgacgtacactactcgcactacggccgtatgtgtccgattgaaacaccggaa
ggaccgaacatcgggttgattaactcgctgtcctcctatgcaaaagtgaaccgtttcggt
ttcattgaaacgccttaccgtaaggtcaatcatgaaacgggcatcgtttctgaaaaagtg
gattatctgactgcagatgaggaagataactacatcgttgcccaggcgaatgccaagttg
aacgaagaaggccagttctcagatgagaacatcatctgccgattccgcggggagaacatc
attgttcctcgggaccgggtagactacatggacgtatcgccaaagcaggttgtctctgcg
gcaacagcttgtattccgttccttgaaaacgacgactccaaccgtgccctgatgggtgcg
aacatgcagcgtcaggccgttccgcttcttgaaccgcattctccgttagtgggaaccggc
atggaatatgtatccgctaaagactccggggcatccgttgttgcgaaaaaccgcggccgg
gttgaaaaagtcaccgcgaaattcgtggatgtccgtgatcttgccgaagtggatggcaaa
gaaaccgaaggcaacctgaagcgttataatttcatgaaatttgagcgttccaaccaggga
acgtgctacaaccagcgcccgatcgtcagtgaaggcatgattgtagatgagggtgagatc
ctggcggatggttcatccatggaaaaaggagaaatggcactcggtcaaaatgtccttgtc
ggttttatgacatgggacgggtacaactatgaggatgccattattctgagcgaacgactc
gttaaggatgacgtctacacgtccattcatatcgaggaatatgaatccgaatcccgggac
acgaaactcggaccggaagaaatcacccgggacattccaaacgtgggtgaagatgcgctg
cgtaatctcgacgagcgcggaattatccgtgtcggtgcagaagtgaaagacggcgacatt
ctcgttggtaaagtgacgcctaaaggtgtgaccgaactgacagcggaagaacgtcttctt
cacgccatcttcggagaaaaagcccgtgaagtaagagacacgtctcttcgtgcaccacat
ggcggcgacgggattgtccttgacgtgaaagtctttaaccgtgaagacggtgatgaattg
ccacctggtgtgaatcagctcgtgcgggcgtatatcgttcagaagcgtaagattaacgaa
ggtgacaaaatggccggacgacacgggaacaaaggtgttatttcccgtatcctgccggaa
gaagatatgccatatcttccggacggtacgccgatcgacatcatgttgaacccgcttggg
gtaccatcgcgaatgaatatcggtcaggtccttgagctccatatgggcatggctgcaagg
cagctcggcatccacattgcaacaccggtatttgacggtgcccgagaagaagacgtttgg
gaaaccatcgaagaatccgggatggcccgtgacggaaagaccgttctctatgacggccgg
accggtgaaccgtttgacagccgggtttccgtcggtgtcatgtatatgattaaactggcg
cacatggtcgatgacaagctgcacgcccgttccacgggaccttattccctcgttacccag
cagccgcttggcggtaaggcacagtttggcggacagcgatttggtgagatggaagtatgg
gcccttgaagcatacggggcagcatatacccttcaggaaatcctcaccgtcaaatccgat
gacaccatcggacgtgtgaagacctatgaagcaatcgtcaaaggtgaaaacgtccctgaa
ccaggggttccggaatcctttaaagtattgatcaaggaacttcagagtctgggtatggat
gtgaaaatgctgtcaagcaatgacgaagaaatcgacatgctcgagcatgaagatgaagaa
gaaaataccggtgaaaagctgaacctcaacttggaatccggcgagtcgaacgcgtaa
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