Bifidobacterium breve JCM 7017: B7017_0186
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Entry
B7017_0186 CDS
T03120
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bbrj
Bifidobacterium breve JCM 7017
Brite
KEGG Orthology (KO) [BR:
bbrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bbrj03032
]
B7017_0186
03400 DNA repair and recombination proteins [BR:
bbrj03400
]
B7017_0186
Enzymes [BR:
bbrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
B7017_0186
DNA replication proteins [BR:
bbrj03032
]
Prokaryotic type
DNA Topoisomerases
B7017_0186
DNA repair and recombination proteins [BR:
bbrj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
B7017_0186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AHJ16741
LinkDB
All DBs
Position
242141..245191
Genome browser
AA seq
1016 aa
AA seq
DB search
MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKPKFGKFGVDVND
GFKPYYIVDGDKKRTVSELKSALKGADELYLATDEDREGEAIAWHLVQTLKPKVPVRRMV
FHEITKDAINASLSKTRDVDSHMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQS
VATRLIVERERERMAFKRAPYWDVVATLAAPDALGERAEFAARMISLGGKRLAGSKDFGS
DGQLTPDGFAGSVRQLDEASATAVAEALKNADFTVMSMETKPYRRRPQPPFTTSTLQQTA
GNRLGMGSRAVMRAAQSLYENGYITYMRTDSVTLSQEAITAARNAVSYHFGDKFLSAEPK
QYATKTAGAQEAHECIRPAGSRFHDPDELASKLPIDQLRLYTLIWQRTLACQMADATGST
ATVRLSAPAGPADGEAVFQASGTVIEFPGFMKATGEGRKPKPAAADAAAADKSGAKATKS
DASESNASLPPMEVGQRVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRPSTYASII
STIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYTFTAEMENGLDRIAHGEETGR
DWLTHFYFGSGEGAARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRVGRYGPYL
EDMEHLDAEGNPKRASLPDTIAPDELTVEVAHDLTDNHSGGPRELGKDPVSGGTVEVRNG
RFGPYVALVPPEGAADSAAAAPAGKKSSKKAAAAASRPRMASLFKTMSPESLSLEDALKL
LSLPREVGKYEETNAETGEVSECTVAANNGRYGPYLTKTSADGRSDTRSLGSEDEIFTVD
IDKAKELFAQPKYGRGRGRGAAKPPLRDLGNDPNTGKHVTIKDGRFGAYITDGETNRTVP
RQYTPESIAPEDAFRLLAEKRAAGPSTRGRRGRERAGAAKSGARGAKKGAASAATNAAEA
KRAGRRAEVKKLANKGWSNQRIAEKLSSTAATVKKDVDWLTANEGYERPAVIPKRG
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaagctcgtgattgtggagtccccgaccaaggcccacaaaatcggtgactat
ctgggcaagggatacaccgtcatggcatcggtcggccatattcgcgaccttgcgcaaccc
agccaggtgcccgcggccgataaacccaagttcggcaagttcggcgtggacgtcaacgat
gggttcaagccctactacatcgtggatggcgataagaagcgcacggtaagcgagctgaaa
tccgccctgaagggcgccgacgagctctatctggcgactgatgaggatcgcgagggcgag
gccatcgcatggcatctggtgcagacgctcaagcccaaggtgccggtcaggcgcatggtg
ttccacgagatcaccaaggacgccatcaacgcctcgctgagcaaaacgcgcgatgtcgac
agccatatggtcgacgctcaggagacccgccgtattctcgaccgactctacggctacgag
ctgtccccagtgctgtggcgcaaggtggggccgggcctgtccgccggccgcgtgcagtcc
gtggccacccgactgattgtggagcgcgagcgcgagcgtatggcgttcaagcgtgcgcct
tactgggatgtcgtcgccacgctggccgcgcctgacgctttgggcgagcgcgccgagttc
gcggcccgcatgatctcgttgggcggcaagcgactcgccggatccaaggacttcggctcg
gatggccagctgactcccgatggttttgcgggcagcgttcgccagcttgatgaggcttca
gccaccgccgtggccgaagcgctgaagaatgccgacttcaccgtgatgtcgatggagacc
aagccgtaccgccgccgcccgcagccgccgttcaccacctccaccctgcagcagaccgcg
ggaaatcgcctcgggatggggtctcgcgcagtgatgcgtgcagcacagagcttgtacgag
aacggctacatcacatacatgcgaaccgattcggtgacgctttcacaggaggccatcacc
gccgcccgcaacgccgtctcctaccatttcggcgacaagttcctctccgccgagcccaag
cagtacgccaccaaaaccgctggcgcgcaggaagcccacgagtgtattcgcccggcggga
tcccgattccatgaccccgatgagctggcctccaagctgcccattgaccaactgcgcctg
tacacgctgatctggcagcgcacgctggcatgccagatggccgacgccaccggatcgacc
gccaccgtgcgcctgtctgcgccggctggtcccgccgatggtgaggctgtattccaggca
tccggcacagtcatcgaatttcctggctttatgaaggccaccggcgagggccgcaagccc
aaacccgccgcagccgacgcggcggccgccgataagtcgggtgccaaggcgaccaagtcc
gatgcctccgaatccaatgcttccctaccgccgatggaggtgggccagcgggtcgaggct
tccgacatcgagccggatggccacgaaacccagcctccggctcgatacaccgaagccacg
ctggtcaagacgttggaagccaaggagatcggccgcccgtccacctatgccagcatcatc
tccacgattatggatcgcggctatgtgtatgagcgtggccgtgcgctgatccccagctgg
ctggcattctccgtgaccaagctgctggaaacgaacttccccaagctggtcgattacacg
ttcaccgctgagatggaaaacggcctcgatcgcattgctcacggcgaggagactggccgg
gattggctgacccacttctactttggctccggcgagggcgcggcccgcaatgccgacgaa
gcgcatgaaggcctgcagcagcaggtggcacagcttggcgagatcgacgcccgagccatc
aacaccattgacatcggcgacggcctgcatgtgcgcgttggccggtacggcccgtatctg
gaagatatggagcatctggatgccgaaggcaacccgaagcgtgcctccctgccggacacc
atcgcgccggacgagctgaccgtcgaagtggctcatgatctgaccgacaaccattccggt
ggcccgcgcgagctgggcaaggacccggtttccggcggcaccgtggaagtgcgcaatggt
cggttcgggccgtatgtggcgttggtgccgcctgagggtgccgccgattccgccgccgct
gcgccggccggcaagaagagctccaagaaggccgcggccgctgcgtcgcgtccgaggatg
gcctcgctgttcaagaccatgagccccgaatcgctctcgttggaagatgcgttgaagctg
ctgagcctgccgcgcgaggtgggcaagtatgaagaaaccaacgccgagaccggtgaggtt
tccgaatgcacggtggccgccaacaacggtcgctatggtccgtatctgaccaagacgagc
gccgacggcaggtcggatacccgttcgttgggctccgaagatgagatcttcaccgtggac
attgacaaggccaaggagctgttcgcccagcccaagtacgggcgtggtcgcggacgtggc
gccgccaagccgccgctgcgtgatttgggcaacgacccgaacaccggcaagcatgtgacc
atcaaggatggccgctttggcgcttacatcaccgatggcgagaccaaccgcacggtgccg
cgccaatacacgccggagtcgattgcgccggaggatgcgttccgtctgcttgccgaaaag
cgcgcggctgggccctccacccgtggccgccgcggccgtgagcgtgccggtgccgcgaag
tcgggagccaggggagccaagaagggcgctgcttcggctgcgaccaatgccgccgaggcc
aagcgcgccggacgccgtgccgaggtgaagaagctggcgaacaagggctggtccaaccag
cgcattgccgaaaagctcagctccaccgccgccaccgtgaagaaggatgtcgactggctg
accgccaacgagggctacgagcgccccgccgtaattcccaagcgtggctga
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