KEGG   Bordetella bronchialis: BAU06_06860Help
Entry
BAU06_06860       CDS       T04591                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bbro  Bordetella bronchialis
Pathway
bbro03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbro00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BAU06_06860 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbro03400]
    BAU06_06860 (ligD)
Enzymes [BR:bbro01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BAU06_06860 (ligD)
DNA repair and recombination proteins [BR:bbro03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BAU06_06860 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ANN66049
LinkDB All DBs
Position
complement(1543132..1545786)
Genome map
AA seq 884 aa AA seqDB search
MVDTLAKYRQKRNFDITSEPAGGGKANAAARAFVIQKHWATRLHYDFRLELDGAMKSWAV
PKGPSYDPSIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
EGHLKFDLMGAKMQGRWALVRLHGKENERQPPWLLIKDRDEFARPDSEFSVVDEMPDSVV
PLRAQRRKAIARASASGGPAQGKAAKKTAGKTAKATKATKAAARAADEFTADPADDGAGG
RKLPGVARALPATLKPQLATLVDGVPPNTADWVYEVKFDGYRIVARLDEDGARLYTRNGH
DWSAKMPHLAKALAGLKVPGTWIDGEIVVLADNGAPSFQALQNAFEGERTANIVYYAFDL
PYVAGRDLREEPLTVRRALLEQLLDGASDGPVRFSAAFDVPPKDLVASACRMGLEGIIAK
RKDAVYVSRRTDTWVKIKCAQRQEFVIIGYTDPRGSRTGFGALLVAVHDDKGGLRYAGKV
GTGFDTRGLAELAKKLQALEVKERPLPHQAEMPRQAHWIRPELVAEVSFGEWTGGGHIRH
SVFRGLRADKPARAITREEAVPAEAVADDDHDGKDETPPPKAAAKKTRAGKEKPGRLSNP
DRVIDPSTGLTKLDLARYYGLVAPLLLTHLKGRPVSLVRAPGGIHEPLFFQKHLEAAMPG
VKPLPEKLDPGHPSLLEVPSDVAIMSAAQMNVVEFHTWNAVKTAIDKPDRMLFDLDPGEG
VKWATLQQAAGLVRVLLRELGLDCWLKTSGGKGLHVVVPLRKQYGWDPVKDFSQAVVRHL
ARTLPQIFVAKSGPKNRVGKIFADYLRNGFGATTVSAWSARARPGLGISVPIAWDELPEI
KSGAQWTIASVHSRLDAGNEPWADYRAQSLGPAMKALDFEPGRR
NT seq 2655 nt NT seq  +upstreamnt  +downstreamnt
atggtcgacacccttgccaagtaccgccagaagcgcaacttcgatatcacgtccgaaccc
gcgggcggcggcaaagcgaacgcggcggcgcgcgccttcgtcatccagaagcactgggcg
acgcgcctgcactacgatttccggctcgaactggatggcgcgatgaaaagctgggccgtg
cccaagggccccagctacgacccatccatcaagcgcatggccgtccaggtggaagaccat
cccatcgcctacaaccagttcgaaggcgaaatacccaagggccagtatggcgccggcaag
gtcatcatctgggacgaaggcacgtggcagccggtgggcgacccgcgcaagggctatcgc
gaagggcatctgaaattcgacctgatgggcgccaagatgcagggccgctgggcgctggtg
cggctgcacggcaaggaaaacgaaaggcagcccccctggctgttgatcaaggatcgcgac
gaattcgcgcggcccgacagcgagttcagcgtggtcgacgaaatgcccgacagcgtggtg
ccgctgcgcgcgcaacgcaggaaggcgatcgcgcgggcgtcggccagcgggggaccggcg
cagggaaaggcggcgaagaagacggccggcaagaccgccaaggcgacgaaagcgacgaag
gccgcggcaagggccgcggatgaatttaccgccgatccggccgacgacggcgccgggggg
cggaaactgcccggggtggcccgcgcgctgcccgccaccctgaaaccccagcttgccacg
ctggtggacggcgtgccgccgaacacggcggactgggtctacgaggtgaagttcgacggc
taccgcatcgtggcccgcctggacgaagacggcgcgcggctctacacccgcaacggccac
gactggagcgcgaagatgccgcacctggccaaggcgctggccggactcaaggtgccgggc
acgtggatagacggcgagatcgtcgtcctggccgataacggcgcacccagtttccaggcc
ctgcagaacgccttcgagggcgagcgcaccgccaatatcgtttactacgccttcgatctt
ccctacgtcgccggccgcgatttgcgcgaagaaccgcttaccgtgcggcgcgccctgctg
gagcaactgctggacggggcttccgacggcccggtgcgcttcagcgccgccttcgacgta
ccgcccaaggacctggtggcgtcggcgtgcaggatgggcctggaaggcatcatcgccaag
cgcaaggacgccgtctatgtgtcccggcgcaccgatacctgggtcaagatcaaatgcgcc
cagcggcaggagttcgtgattatcggctacaccgatccgcgcggcagccgcaccggtttc
ggcgcgctgctggtcgcggtccatgacgacaagggcggcctgcgctacgccggcaaggtc
ggcacgggcttcgacacgcgcgggctggccgaactggcgaagaagctgcaggcgctggag
gtcaaggaacggccgctgccgcaccaggccgagatgccgcgccaggcgcactggatccgc
ccggaactggtcgccgaagtgtccttcggcgaatggacgggtggtgggcatatccgtcat
tcggttttccggggcttgcgggccgacaagccggcgcgcgcgatcacccgcgaggaagcc
gtccccgccgaggcggtcgccgacgacgaccatgacggcaaggacgagacgcccccgccc
aaagccgccgcgaagaaaacccgggcaggaaaagaaaagccgggccggctgtccaatccc
gaccgggtcatcgatccctccacgggcctgaccaagctggacctggcgcgctattacggg
ctggtggcgccgctgctgctgacgcacctgaaaggcaggccggtctcgctggtgcgcgcg
ccgggcggcatccacgagccgctgttcttccagaagcacctggaagcggccatgccgggc
gtcaagcccttgccggaaaaactggacccgggccatccctctttgctggaagtaccgtcg
gacgtggccatcatgtcggcggcgcagatgaacgtggtggaattccacacctggaacgcc
gtcaagaccgcgatagacaagcccgaccgcatgctgttcgacctggatcccggggaaggc
gtgaaatgggccacgctgcagcaggccgccgggctggtacgcgtgctgctgcgggagctc
ggcctggactgctggctgaagaccagcggcggcaaggggctgcacgtggtcgtgccgctg
cgcaagcagtacggctgggacccggtgaaggatttttcgcaggccgtcgtgcggcatctg
gcgcgcaccctgccccagatcttcgtggcgaagagcggtcccaagaaccgcgtgggcaag
atcttcgcggactacctgcgcaacggcttcggcgccaccaccgtatcggcctggtcggcg
cgcgcgcgtcccggactcggcatctcggtgcctatcgcctgggatgaactgccggaaatc
aagagcggcgcgcagtggaccatcgccagcgtccacagccgcctggacgcgggcaacgag
ccctgggcggattaccgcgcccaatccctggggcccgccatgaaggcgctggacttcgag
cccgggcgccggtag

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