KEGG   Bradyrhizobium sp. BTAi1: BBta_6329
Entry
BBta_6329         CDS       T00528                                 
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bbt  Bradyrhizobium sp. BTAi1
Pathway
bbt03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bbt00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BBta_6329
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bbt03400]
    BBta_6329
Enzymes [BR:bbt01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BBta_6329
DNA repair and recombination proteins [BR:bbt03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BBta_6329
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DUF5824
Other DBs
NCBI-ProteinID: ABQ38247
RhizoBase: BBta_6329
UniProt: A5EQ03
LinkDB
Position
complement(6590370..6593057)
AA seq 895 aa
MALKKLSTYRKKRDFEKTAEPSGDAKVAPAPRPRFVIQKHDATRLHYDLRLEFGGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWDSEDPERGF
EKGDLKFTLDGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEFAREGAANDILEADRSV
ASGRTMAQIAAGKGRAPKPFMLGKTKRMNADAVWHSNRSDSKASPARKLAPKSKPAKVAG
RPKQAAPRSVASLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVEDGRATLKTRK
GLDWTAKFGAIAEEAGKLPDAIIDGEIVALEQDGNPNFSALQAAISAGQTDELIFFAFDL
MFVDEFDLRRQPLRERKARLAKLLKASIKGKTPRIRYVEHFESDGEAVLESVRKLKLEGI
VSKKLDSAYHSGRTESWTKAKTRPGHEVVIGGWKTTNGKFRSLMVGVTQDDHLAYVGIVG
TGFGQDTVKEIMPALQAAAADKSPFGGKNAPRKARDVHWVKPELVAEIEFAGFTGDGNVR
QASFKGLRQDKPAREVVAEQPVVARKVTKPVARAAATVATGGATVHKTPSRSKSSATVMG
VAISKPDKALWPDAGDGELVTKLDLANYLAAVGDWMIVHLKGRPCSIVRAPDGIAGETFF
QRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCAPDAYDVPGRL
VFDLDPAPNVAFEAVMAAAKEMRQRLESLGLESFCKTTGGKGLHVVVPLRHGARDRVTWP
EAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAVLSPRAREGAT
VSMPVTWAQVKNGLDPKRYTVRTVPALLAKTKAWEGYDDAARSIKPAIKKLTDKL
NT seq 2688 nt   +upstreamnt  +downstreamnt
gtggcgctcaagaagctttccacctaccgcaagaagcgcgatttcgagaaaacggcagag
ccgtccggcgacgccaaggtcgcgcccgccccgcggcctcgctttgtgatccagaagcat
gatgcgacgcggctgcattacgacctacggctggaatttggcggcgttttcaagtcatgg
gccgtgaccaaggggccatcgcttgatccgcacgacaagcggctcgcggtcgaggtggag
gaccatccgctcgactacggcgatttcgaaggcacgattccggaaggcgaatatggcggc
ggcaccgtcatgctgtgggatcgcggctattgggatagcgaggatcccgagcgcggcttc
gagaagggcgatctgaaattcaccctcgatggcgagaagctgcatggcagctgggtgctg
gtgcggatgcgcaatgatcgcaccggcggcaagcgtaccaactggctcttgatcaagcat
cgcgacgagttcgcccgggagggcgcggccaacgacattctggaggccgatagatccgtc
gcgtcgggccgcacgatggcgcagatcgcggccggcaagggcagggcgcccaagcccttc
atgctcggcaagaccaagcgcatgaatgccgacgcggtgtggcactccaaccgtagcgac
agcaaggcctcgcccgcgcggaagctggcgccgaaatccaaaccggcgaaggtcgccggt
cggccgaaacaggccgcgccgcggagcgtggcatcgctgccggacttcgtcccgcccgag
ctctgcacctccgtggcgcagccgccgagcggcgagggctgggcgcatgagatcaagttc
gacggctaccgcgtgcagatcagggtcgaagacggcagggccaccctcaagacgcgcaag
ggcctggactggaccgccaagttcggcgccattgccgaggaagccggcaagctgcccgac
gcgatcatcgatggcgagatcgtcgcgctcgagcaggacggcaatccgaatttctcggcg
ctgcaggcggcgatctctgcgggccagaccgatgagttgatcttctttgccttcgacctg
atgttcgtcgacgagttcgacctgcgccgtcagccgctgcgcgagcgcaaggcgcggctt
gcaaagctcttgaaggcaagcatcaagggcaagacgccgcgcattcgttatgtcgagcat
ttcgagagcgacggcgaggcggtgctggagtccgtgcgcaagctgaagctcgaaggcatc
gtctcgaagaagctcgactccgcctatcactccgggcgaaccgagagctggaccaaggcc
aagacccggcccggccacgaggtcgtcattggcggctggaagaccaccaatggcaaattc
cgttcgctgatggtcggcgtcacccaggacgatcatctcgcttatgtcggcatcgtcggc
accggcttcggccaggacacggtgaaggagatcatgccggcgctgcaggcggctgcggct
gacaagagcccgttcggcggcaagaacgcgccccgcaaggcgcgcgacgtgcattgggtg
aagcccgagctggtcgccgagatcgagtttgcaggctttaccggcgacggcaatgtccgg
caggcctcgttcaagggcctgcgtcaggacaagccggcacgcgaggtcgtcgcggagcag
ccggtcgtcgccaggaaagtgacgaagccggtggcgcgtgctgcggcgacggtcgcgacg
ggcggcgccaccgtgcacaagacgccgtcgcggtcgaagagctcagccacggtgatgggc
gttgcgatctcgaaacccgacaaggcgctgtggccggacgccggcgacggcgaactggtc
accaagctcgatctggcgaactatctcgccgcggtcggcgactggatgatcgtgcatctg
aagggacggccgtgctcgatcgtccgcgcgcccgatggcatcgctggcgagaccttcttc
cagcggcacggcatgcagggcatgtccgacctgctcgaactcgtcaaagtctccggcgat
cgcaagccctatctgcagatcgatcgcgtcgagggactgattgccgtggctcaggtcgca
gcggtcgagctgcatccatggaactgcgcgcctgacgcctatgacgtgccgggccggctg
gtgttcgatctcgatccggcgccgaatgtggcatttgaggcggtgatggcagccgccaag
gagatgcggcagcgactggagagcctcggcctggaaagcttctgcaagaccaccggcggc
aagggcctgcacgtcgtggtgccgctgcgccatggcgcgcgcgacagggtgacgtggccg
gaggcgaaggcctttgcgcagggcgtgtgccagtggatggccaatgacagtccagatgac
tatctgctgaacatgtcgaagaagctgcgcaagggaaagatcttcctcgactatctgcgc
aacgaccggatgtcgacggctgtggcggtgttgtcaccccgggcgcgggaaggcgcgacg
gtgtcgatgccggtgacctgggcgcaggtgaagaacgggctcgatccgaagcgctacacc
gttcgcacggtcccggcgctgctggccaagaccaaggcatgggaggggtatgacgacgcg
gcccgatcgatcaagccggcgatcaagaagctgacggacaaattgtag

DBGET integrated database retrieval system