Bradyrhizobium sp. BTAi1: BBta_6329
Help
Entry
BBta_6329 CDS
T00528
Name
(GenBank) ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bbt
Bradyrhizobium sp. BTAi1
Pathway
bbt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bbt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBta_6329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbt03400
]
BBta_6329
Enzymes [BR:
bbt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBta_6329
DNA repair and recombination proteins [BR:
bbt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBta_6329
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DUF5824
Motif
Other DBs
NCBI-ProteinID:
ABQ38247
RhizoBase:
BBta_6329
UniProt:
A5EQ03
LinkDB
All DBs
Position
complement(6590370..6593057)
Genome browser
AA seq
895 aa
AA seq
DB search
MALKKLSTYRKKRDFEKTAEPSGDAKVAPAPRPRFVIQKHDATRLHYDLRLEFGGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWDSEDPERGF
EKGDLKFTLDGEKLHGSWVLVRMRNDRTGGKRTNWLLIKHRDEFAREGAANDILEADRSV
ASGRTMAQIAAGKGRAPKPFMLGKTKRMNADAVWHSNRSDSKASPARKLAPKSKPAKVAG
RPKQAAPRSVASLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVEDGRATLKTRK
GLDWTAKFGAIAEEAGKLPDAIIDGEIVALEQDGNPNFSALQAAISAGQTDELIFFAFDL
MFVDEFDLRRQPLRERKARLAKLLKASIKGKTPRIRYVEHFESDGEAVLESVRKLKLEGI
VSKKLDSAYHSGRTESWTKAKTRPGHEVVIGGWKTTNGKFRSLMVGVTQDDHLAYVGIVG
TGFGQDTVKEIMPALQAAAADKSPFGGKNAPRKARDVHWVKPELVAEIEFAGFTGDGNVR
QASFKGLRQDKPAREVVAEQPVVARKVTKPVARAAATVATGGATVHKTPSRSKSSATVMG
VAISKPDKALWPDAGDGELVTKLDLANYLAAVGDWMIVHLKGRPCSIVRAPDGIAGETFF
QRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCAPDAYDVPGRL
VFDLDPAPNVAFEAVMAAAKEMRQRLESLGLESFCKTTGGKGLHVVVPLRHGARDRVTWP
EAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAVLSPRAREGAT
VSMPVTWAQVKNGLDPKRYTVRTVPALLAKTKAWEGYDDAARSIKPAIKKLTDKL
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctcaagaagctttccacctaccgcaagaagcgcgatttcgagaaaacggcagag
ccgtccggcgacgccaaggtcgcgcccgccccgcggcctcgctttgtgatccagaagcat
gatgcgacgcggctgcattacgacctacggctggaatttggcggcgttttcaagtcatgg
gccgtgaccaaggggccatcgcttgatccgcacgacaagcggctcgcggtcgaggtggag
gaccatccgctcgactacggcgatttcgaaggcacgattccggaaggcgaatatggcggc
ggcaccgtcatgctgtgggatcgcggctattgggatagcgaggatcccgagcgcggcttc
gagaagggcgatctgaaattcaccctcgatggcgagaagctgcatggcagctgggtgctg
gtgcggatgcgcaatgatcgcaccggcggcaagcgtaccaactggctcttgatcaagcat
cgcgacgagttcgcccgggagggcgcggccaacgacattctggaggccgatagatccgtc
gcgtcgggccgcacgatggcgcagatcgcggccggcaagggcagggcgcccaagcccttc
atgctcggcaagaccaagcgcatgaatgccgacgcggtgtggcactccaaccgtagcgac
agcaaggcctcgcccgcgcggaagctggcgccgaaatccaaaccggcgaaggtcgccggt
cggccgaaacaggccgcgccgcggagcgtggcatcgctgccggacttcgtcccgcccgag
ctctgcacctccgtggcgcagccgccgagcggcgagggctgggcgcatgagatcaagttc
gacggctaccgcgtgcagatcagggtcgaagacggcagggccaccctcaagacgcgcaag
ggcctggactggaccgccaagttcggcgccattgccgaggaagccggcaagctgcccgac
gcgatcatcgatggcgagatcgtcgcgctcgagcaggacggcaatccgaatttctcggcg
ctgcaggcggcgatctctgcgggccagaccgatgagttgatcttctttgccttcgacctg
atgttcgtcgacgagttcgacctgcgccgtcagccgctgcgcgagcgcaaggcgcggctt
gcaaagctcttgaaggcaagcatcaagggcaagacgccgcgcattcgttatgtcgagcat
ttcgagagcgacggcgaggcggtgctggagtccgtgcgcaagctgaagctcgaaggcatc
gtctcgaagaagctcgactccgcctatcactccgggcgaaccgagagctggaccaaggcc
aagacccggcccggccacgaggtcgtcattggcggctggaagaccaccaatggcaaattc
cgttcgctgatggtcggcgtcacccaggacgatcatctcgcttatgtcggcatcgtcggc
accggcttcggccaggacacggtgaaggagatcatgccggcgctgcaggcggctgcggct
gacaagagcccgttcggcggcaagaacgcgccccgcaaggcgcgcgacgtgcattgggtg
aagcccgagctggtcgccgagatcgagtttgcaggctttaccggcgacggcaatgtccgg
caggcctcgttcaagggcctgcgtcaggacaagccggcacgcgaggtcgtcgcggagcag
ccggtcgtcgccaggaaagtgacgaagccggtggcgcgtgctgcggcgacggtcgcgacg
ggcggcgccaccgtgcacaagacgccgtcgcggtcgaagagctcagccacggtgatgggc
gttgcgatctcgaaacccgacaaggcgctgtggccggacgccggcgacggcgaactggtc
accaagctcgatctggcgaactatctcgccgcggtcggcgactggatgatcgtgcatctg
aagggacggccgtgctcgatcgtccgcgcgcccgatggcatcgctggcgagaccttcttc
cagcggcacggcatgcagggcatgtccgacctgctcgaactcgtcaaagtctccggcgat
cgcaagccctatctgcagatcgatcgcgtcgagggactgattgccgtggctcaggtcgca
gcggtcgagctgcatccatggaactgcgcgcctgacgcctatgacgtgccgggccggctg
gtgttcgatctcgatccggcgccgaatgtggcatttgaggcggtgatggcagccgccaag
gagatgcggcagcgactggagagcctcggcctggaaagcttctgcaagaccaccggcggc
aagggcctgcacgtcgtggtgccgctgcgccatggcgcgcgcgacagggtgacgtggccg
gaggcgaaggcctttgcgcagggcgtgtgccagtggatggccaatgacagtccagatgac
tatctgctgaacatgtcgaagaagctgcgcaagggaaagatcttcctcgactatctgcgc
aacgaccggatgtcgacggctgtggcggtgttgtcaccccgggcgcgggaaggcgcgacg
gtgtcgatgccggtgacctgggcgcaggtgaagaacgggctcgatccgaagcgctacacc
gttcgcacggtcccggcgctgctggccaagaccaaggcatgggaggggtatgacgacgcg
gcccgatcgatcaagccggcgatcaagaagctgacggacaaattgtag
DBGET
integrated database retrieval system