Bubalus bubalis (water buffalo): 102412807
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Entry
102412807 CDS
T05912
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer isoform X2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
102412807 (DICER1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bbub03036
]
102412807 (DICER1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102412807 (DICER1)
microRNA pathway
RISC loading complex
102412807 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Motif
Other DBs
NCBI-GeneID:
102412807
NCBI-ProteinID:
XP_044788768
EnsemblRapid:
ENSBBUG00015011872
LinkDB
All DBs
Position
20:10417673..10493572
Genome browser
AA seq
1892 aa
AA seq
DB search
MSKCSSDNSNTEISNIKTVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFN
RNGKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSNLEVSASWTKEKWNLEFTKHQVLVM
TCYVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCENCPSCPRILGLTASIL
NGKCDPEELEEKIQKLEKILKSNAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERL
LMELEEALNFINDCNISVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQ
KHIKHEQEELHRKFLLFTDTFLRKIHALCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY
ERQQFESVEWYNNRNQDNYVSWSDSEDDEEDEEIEEKEKPETNFPSPFTNILCGIIFVER
RYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEVLRKFRA
HETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIK
SFEEDLKTYKAIEKILRNKCSKSVDTGEADTEPVVDDDDVFPPYVLRPEDGPRVTINTAI
GHVNRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMSCIRLAE
RVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPK
AIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIP
QIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTD
ADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAV
IIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVD
HTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKA
VCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISIA
NSSSAENENYCKHSTIVVPENAAHQGANRTSPLENHDQMSVNCRTLFSESPGKLQIEVST
DLTAINGLSYNKSLANGSYDLANRDFCQGNHLNYYKQEIPVQPTTSYPIQNLYNYENQPK
PSDECTLLSNKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTL
GPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKK
VSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNTEKWEKDEMTKDCMLAN
GKLDDDFEEEEEEEEDLMWRAPKEDADDEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLS
PFSATDSAYEWKMPKKSSLGSLPFSSDFEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNP
SEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV
LPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMF
DHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA
ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID
DFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETV
WQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKF
KGVGRSYRIAKSAAARRALRSLKANQPQVPNS
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaatgcagttcagacaacagcaacacagagatctcaaacattaagacggttgaa
ctgcttgaagcagctctggatcataataccatagtctgtttaaacactggctcagggaag
acgtttattgcagtactactcactaaagagctgtcctatcagatcaggggagacttcaac
agaaatggcaaaaggacggtgttcttggtcaactctgcaaaccaggttgctcaacaagtg
tcagctgtcagaactcactcagatctcaaggtcggggaatactcaaacttagaagtaagt
gcatcttggacaaaagagaaatggaacctagagtttactaaacatcaggttctcgttatg
acttgctatgtcgccttgaatgttttgaaaaatggttacttatcactgtcagacattaac
cttttggtgtttgatgagtgtcatcttgcaatcctagaccacccctaccgagaaattatg
aagctttgtgaaaattgtccatcatgtcctcgtattttgggactaactgcttccatttta
aatgggaaatgtgatccagaggaattggaagaaaagattcagaaactggagaaaattctt
aagagtaatgctgaaactgcaactgacttggtggtcttagacagatatacttctcagcca
tgtgagattgtggtagactgtggaccatttactgacagaagtgggctttatgaaagactg
ctgatggagttagaagaagcacttaattttatcaatgactgtaacatatctgtacattca
aaagaaagagattctactttaatttctaaacagatactctcagactgccgtgcggtcctg
gttgtcctgggaccctggtgtgccgataaagtagctggaatgatggtcagagagctgcag
aaacacatcaaacatgagcaagaggagctgcaccggaagtttctgttgttcacagacact
ttcctacggaaaatccacgccctgtgtgaagagcacttctcccctgcctcgcttgacctg
aagtttgtcactcctaaagtaataaagctgctcgagatcttacgcaaatacaaaccgtat
gagcggcagcagtttgaaagcgtggagtggtataataataggaaccaggataattacgtg
tcctggagcgattctgaggatgacgaggaagatgaagagattgaagagaaagaaaagcca
gagacaaattttccttctccatttaccaatattttgtgtggaattatttttgtggaaaga
agatacacagccgtggtcttaaacagattgataaaggaagctggcaaacaagatccagag
ctggcttacatcagcagcaattttataactggacatggcatcggaaagaatcagcctcgg
aacaaacagatggaagcagaattcagaaagcaggaagaggtacttaggaaatttcgagca
catgaaaccaacctgcttattgcaacaagtattgtggaggagggtgtcgacataccgaaa
tgcaacttggtggttcgtttcgatctgcccacagagtatcgatcctacgttcagtcgaag
ggaagagcgagggcacccatctctaattatgtaatgttagcagacacagataaaataaag
agttttgaagaagaccttaaaacatacaaagctattgaaaagatcttgcgaaacaaatgt
tccaagtcggttgataccggggaggccgacacggagcccgtggtggatgacgacgatgtt
ttcccaccgtacgtgctgaggcctgaggacggtccccgtgtcacgatcaacacagccatt
gggcatgtcaacagatactgtgctagattaccaagtgatccatttactcatctggctcct
aaatgtagaacccgagagttgcctgatggtacattttattcaactctttatctgccaatt
aactcacctcttcgagcctccattgttggtcccccaatgagctgcattcgattggctgaa
agagtcgtggctctcatttgctgtgaaaaactgcacaaaattggcgaactggatgaccat
ttgatgccagttgggaaggagactgttaaatacgaggaagagctggatttacacgatgaa
gaagagaccagtgttccaggaagaccaggttccacaaaacgaagacagtgctacccaaaa
gcaattccagaatgtttgagggagagctaccccaggcccggtcagccctgttacctgtac
gtgatcggaatggtcctgacgacacctttacctgatgagctcaacttcagaaggcggaag
ctctacccccctgaggacaccacaagatgctttggaatactgacagccaagcccatacct
cagatcccacactttcctgtgtatacgcgctctggagaggtgaccatatctattgagttg
aagaagtccggcttcacgttatctctgcaaatgcttgagttgatcacaaggcttcaccag
tatatattctcacatattcttcggcttgaaaaacctgcactagaatttaaacccacagac
gcggactcagcctactgcgttctacctcttaatgttgttaatgactccagcactttggac
attgactttaaattcatggaagatatcgagaaatctgaagctcgcataggcattcccagc
acaaagtattcaaaagaaactccctttgttttcaaattagaagattaccaagatgcagtt
atcattccaagataccgcaattttgatcagcctcatcgattttatgtcgctgacgtgtac
actgatcttacccccctgagtaaatttccttcccctgagtatgaaacgtttgcggagtat
tacaaaacaaagtataaccttgacctgaccaatctcaaccagccgctgctggacgtggac
cacacgtcttcacgacttaatcttttgacacctcgtcatttgaatcagaaggggaaagct
cttcctctgagcagtgccgagaagaggaaagccaagtgggaaagcctgcagaataaacag
atactggttccagaactctgtgctatacatccaattccagcatcactgtggagaaaagcc
gtttgtctccccagcatactttaccgccttcactgccttctgactgcagaggagctcaga
gcccagacagccagcgatgctggtgtgggagtcagatcacttcctgtggattttagatac
cctaacttagactttgggtggaaaaaatctatcgacagcaaatctttcatctcaattgct
aactcctcttcagctgaaaatgagaattactgtaagcacagcacaattgtcgtccctgaa
aatgctgcacatcaaggtgctaatagaacctcccctctagaaaatcatgaccaaatgtct
gtgaactgcagaacgttgttcagcgagtcacctggtaagctccaaattgaagtttcaaca
gatctgacagcaattaatggtctttcttacaataaaagtcttgccaatggcagttacgat
ttagctaacagagacttttgccaaggaaaccatctgaattactataagcaggaaatacct
gtacaaccaactacctcatatcccattcagaatttatacaattacgagaaccagcccaag
cccagcgatgaatgtactctactgagtaataaataccttgatggaaatgctaacacatct
acctcagatggaagtcccgtgacggccgccgtgcctggtactacagagactggggaggcg
cccccggacaggacggcttctgagcagagcccttctcctgggtactcctcgaggacgctt
ggccccaaccctgggctcattcttcaggctttgaccctttcgaacgctagcgatggattt
aacctggagcggctcgagatgcttggcgactccttcctcaagcacgccatcaccacgtat
ctcttctgcacttaccccgatgcgcacgagggccgcctttcctacatgagaagcaaaaag
gtcagcaactgtaatctgtatcggcttggaaaaaagaaggggctgcccagccgcatggtg
gtgtccatatttgacccccctgtgaattggcttcctcctggttacgtagtaaaccaagac
aaaagtaacacagagaaatgggaaaaagatgaaatgacaaaagactgcatgttggctaat
ggcaaactggacgatgactttgaggaggaggaagaggaggaggaggacctgatgtggaga
gctcccaaggaggatgcggacgacgaggacgacttcctggaatacgatcaggagcacatc
aagttcatagataacatgctgatggggtcaggggctttcgtcaagaaaatctcactttct
cctttttccgccaccgattctgcatacgagtggaaaatgcccaaaaagtcctcccttggt
agtctgccattctcatccgattttgaggatttcgactacagctcgtgggatgcgatgtgc
tatctggatccgagcaaagccgttgaagaggatgactttgtggtggggttctggaatcca
tcagaagaaaactgtggtgtggacacagggaagcagtccatctcttacgacctgcacacc
gagcagtgcattgctgacaaaagcatagccgactgtgtggaagccctgctgggctgctat
ttaaccagctgtggtgagagggctgctcagcttttcctctgttcgctggggctgaaggtg
ctcccggtaattaaaaggactgatcgggaaaaggccatgtgcccgaccagggagaatttc
accagccaacaaaagaacctttcagggagccgtgcggccgcctctggagccggctaccga
gcctctgtgttgaaagacttggagtatgggtgtttgaagatccccccgaggtgtatgttt
gatcaccccgacgcagacaggacactgcgtcacctgatctcgggttttgaaaatttcgaa
aagaaaatcaactacagattcaagaataaggcttaccttctacaggcttttacacacgcc
tcctaccactacaatacgatcacggattgttaccagcgcttagaattcctgggagatgca
attttggactacctcataactaagcacctttatgaagacccacggcagcactccccaggg
gtcctgactgacctgcgctctgctctggtcaacaacaccatcttcgcgtcgttggctgtg
aagtatgactaccacaagtactttaaggccgtttctcccgagctcttccacgtcattgat
gatttcgtgcagtttcagctcgagaagaacgaaatgcaaggaatggattctgagcttagg
cgatccgaggaggatgaagagaaggaagaggatattgaagttccaaaggccatgggggat
attttcgagtcactcgcgggcgccatttacatggacagtgggatgtcgctggagacggtc
tggcaggtgtactatcccatgatgcggccgctgatcgaaaaattttctgcaaatgtgccc
cgttcccctgtgcgagaattgcttgaaatggaaccagaaactgccaaattcagcccagct
gagagaacctacgatggcaaggtcagagtcaccgtggaagtggtcgggaaggggaagttc
aaaggcgttggccgaagttacaggattgccaagtctgcagcagcaagaagagccctgcga
agcctcaaagctaatcaacctcaggttcccaatagctga
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integrated database retrieval system
