Borreliella burgdorferi ZS7: BbuZS7_0642
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Entry
BbuZS7_0642 CDS
T00807
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bbz
Borreliella burgdorferi ZS7
Pathway
bbz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bbz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BbuZS7_0642 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bbz03400
]
BbuZS7_0642 (mfd)
Enzymes [BR:
bbz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BbuZS7_0642 (mfd)
DNA repair and recombination proteins [BR:
bbz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BbuZS7_0642 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACK74639
UniProt:
A0A0H3C3Y8
LinkDB
All DBs
Position
complement(646424..649801)
Genome browser
AA seq
1125 aa
AA seq
DB search
MNIDEELTTILKNNSNLKKMKEFLEQNIFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIV
KDEHTLDKIKNDLQVITNQIFELNYFSPLVYKGIGSKSTIFNERIKFLINFYKKNPGIYI
TVLKSLLSKIPDKNTLLKNIYKIEKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGE
IIDIYPFGEQNPIRIALNFDKIEEIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINT
LKTKIKSVEYKKILEELDFKKETKTEEMFYPLVANTYLGDEIEKHTPIVNFEINNFEKEI
EKIHQEYEKLYKEAEEAGKNIINPKRILLNYKTFNLKSDVLFSKIKSLKSKETIEFKIES
ERNFFSNIALTKEEFENWLKNGFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLI
IEKEKIAIILESNIFNTGQKINKAFESSKTKAIDSFVEIEKNSHVVHINHGIGIFRQIKR
IKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSDPKNIKLDKISSKTWIKNKANAK
KRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKEIKEDMMS
FKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFKNFPI
KIEVLSRFIKNNAETRILKELKIGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRFGVKE
KEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLI
KHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTGEEIENIMHNFI
KKAYQILLATTIIENGIDIPNVNTIIINNANKFGLAQLYQLKGRVGRGSQKAYAYFLYQD
SEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLTM
LNKAIEKKMGKISSDEEEVDIEINYSGFIPENYAKNEQDKILIYKKIFKIQTEEESKKIR
SELHNDFGPIPEEINSLLMLAELKILAKDLNITKLKEKNRALEIEYKNIESIPMEKIIEI
LQKHPNLLLLNPSYQKSIFLSFKNIEKSEKINYIYKNINLLKTST
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgaatatagatgaagaactaacaacaatattaaagaataattctaatttaaaaaaaatg
aaagaatttttagaacaaaatatatttttttcattaacaggatatgaaggatttttcaaa
gcctttttaattaaaaaaatcaaagaatatagtaaaaccgggaaaataatattaatagtt
aaagacgagcacacattagataaaatcaaaaacgatttacaagtaattacaaatcaaatc
tttgagcttaactattttagcccccttgtatacaagggcattggctcaaaaagtacgatc
tttaacgaaagaatcaaattcttaatcaatttttataaaaaaaatcctggaatatatatt
acagtcttgaaatcattgcttagcaaaatacccgataaaaatacattactaaagaatata
tataaaattgaaaaaaataccaatattaatacagcagacattgaaaaaactcttataaca
ttgggatatgaaaaaacattaagagtaacaattccaggagaatttacagtaaaaggagaa
attatagatatatacccttttggagaacaaaatccaataagaattgcactaaactttgac
aaaatagaagaaataaaaaaatttaatcccttaacccaattaaaacacgataatgaaatt
ttagaattccaaattcttccaaaaaaagaaattatttgggacgataaaactattaacacc
ttaaaaacaaaaattaaatctgttgaatataaaaagattcttgaagagttggattttaaa
aaagaaacaaaaacagaagaaatgttttatccactagtagcaaatacttacttaggtgat
gagattgaaaaacacacacctattgtaaactttgaaattaacaatttcgaaaaagaaatt
gaaaaaatacaccaagaatatgaaaagctttacaaagaagcagaagaagccggtaaaaat
ataattaatccaaaaagaattctcttaaattataaaaccttcaatctaaaaagcgatgtt
ttattttcaaaaattaaaagccttaaatccaaagaaactatagagtttaaaatcgaaagt
gagagaaactttttttcaaatatagcacttacaaaagaagaatttgaaaattggctgaaa
aatggatttaaaatcattattgcagcagaatctgaatcacaaaaagaaaaacttaaatat
attttcaaagaattgccaaaagtatcaattgaggttttaaaaatatctagctctttaata
atagaaaaagaaaaaattgccattattcttgaatcaaacattttcaatacggggcaaaaa
ataaacaaagcctttgaatcttcaaaaacaaaagctattgactcttttgttgagattgag
aaaaatagtcacgtagttcacataaaccatggaattggtatatttaggcaaataaagaga
ataaaaacaagctctcttgaaaaggattatattgaaattgaatacgctgaaggagaaaaa
ctatttattccaattgaacaaacaaatttaatccaaaaatacattggaagtgatcctaaa
aatattaaattagataaaattagttctaaaacatggataaaaaacaaagcaaacgcaaaa
aaaagaatcgaagagattgcagacaaattaatagaactttattcaaaaagagaaagcatt
aaaggtattaaatacccagaagataatgaattacaattgttgtttgaatctgaatttcca
tacgatgaaactccagatcaaataagagcaataaaagaaataaaagaagatatgatgagc
ttcaaagtaatggatcgccttctttgtggagatgttggatttggaaaaactgaagttgcc
atgagagctgcttttaaagccgtaatgggaaacaaacaggttattgtactctcaccaaca
actatcttagcagaacagcatttcaatacattcaaaaaaagatttaaaaattttccaatc
aaaatcgaagtattaagtagatttataaaaaataacgcagaaacccggattttaaaagaa
cttaaaattggaaaaattgatataatcataggaacacacaaaattctttcaaaaaaattc
acctgcaaaaatttagggttaataataattgatgaagaacaaagatttggtgtaaaagaa
aaagaaaaacttaaagaaataagaatttcggttgattgccttgctctttctgcaacacca
attcccaggtctcttcacatgtcactaattaagcttagagatatttccgttttaaaaatt
ccgcctcaaaacagagtaaaaatagaagcttatttagaatcatttagcgaacttttaata
aaacatgcaattgagagtgaactgtctcgagatggtcaagtttttttagtaaatcataat
attgaagaactgtattatttaaaaacactaattgaaagattaaccccttatgcaagaatt
gcaataattcatggaaaactaacaggagaagagattgaaaatataatgcacaattttatt
aaaaaagcgtatcaaattttattggcaacaacaataattgaaaatggaatagatattcca
aatgtaaatacaataataataaataatgcaaacaagtttggacttgcacagctatatcaa
ctaaaaggaagagttggaagaggatctcagaaagcttatgcttattttttgtaccaagac
agcgaaaagctaaatgaacgctctattgaaagattaagagcaataacagaattttcagag
ctaggagcaggatttaaaatagcaatgaaagatatggaaataagaggtgttggcaattta
cttggtagagaacaacatggggagattgagtcgattggactagattactatctaacaatg
ctaaataaagcaattgaaaagaaaatgggaaaaatctcatcagatgaagaagaggttgat
attgaaattaactatagtggatttattcctgaaaattatgcaaaaaatgagcaggataaa
atactaatctacaaaaaaatctttaaaattcaaactgaagaggaaagtaaaaaaataaga
tcagagctccacaacgactttggcccaatacccgaagaaataaacagtctattaatgttg
gctgaacttaaaattctagcaaaagatttaaacataacaaaattaaaagaaaaaaacagg
gctttggaaatagaatacaaaaatatagaaagcattcctatggaaaaaataatagaaata
cttcaaaaacatcctaatttattattattaaatccctcatatcaaaaatcaatattttta
agctttaaaaatattgaaaaatctgaaaaaataaattacatatataaaaatattaactta
ctaaaaacaagcacataa
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