Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_0223
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Entry
BBCT_0223 CDS
T03931
Name
(GenBank) ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBCT_0223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcat03019
]
BBCT_0223
03009 Ribosome biogenesis [BR:
bcat03009
]
BBCT_0223
Enzymes [BR:
bcat01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BBCT_0223
Messenger RNA biogenesis [BR:
bcat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBCT_0223
Ribosome biogenesis [BR:
bcat03009
]
Prokaryotic type
rRNA processing factors
BBCT_0223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
BAR01191
LinkDB
All DBs
Position
287187..290015
Genome browser
AA seq
942 aa
AA seq
DB search
MPNTNESFDQVEAVASPEHAVNVVKFESAQSDSAPRRRRGGRRVVRGVGAAGASLELKVE
EHAATPLFEEPKLPVAQPAHDAGDVAVSSDDGDSDGVSRPTRRRHRSARPDDDVREIADE
QSTRTRRRRAMQVEDERDEDRPRRRRRSVGDADEYDEMSRRRRRSAVDDFRDEESFEERA
LDAVDMLPEGHEVRHNPRPMMSLLFQEPVLPSAADSRDRSDDDRDDSRESRNDRNMQDHD
DAQGEDRPTRRRRRRNRDVADEERSEDNHSERNERDNRNDDAENDEEGGSRKSRRSRRLN
AQERRAAAEVEQIEEDLILDDITYAPIDDETRGNRGDDDDDEQPTRTRRRRRGHGSREEA
DERQQENAEGESRRRREEDDEEEGTVTRRRRRRRGGAKAEEQEEMLVRRSRKQQYIDEIT
DVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARREHVDRLMVVRERERHTQISVIED
NVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDSARLE
GQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSE
RERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERITAKRDEFLHGKR
PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH
EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETV
TRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAEV
TSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVSADYDDPYALKGGDPFVKT
NKHGHGTDVQVPKGSSPDVKAKLAQIAAAAVAANNAELGEEA
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
gtgcctaataccaatgagagcttcgatcaggtcgaagccgtggcatcacctgagcatgcc
gtgaatgttgtgaaattcgaatcggcccagtccgattctgcgccgcgtcgccgtcgtggc
ggtcgtcgtgtggtgcgtggggttggagccgccggcgcgtctttggaattgaaggtcgag
gagcatgccgcgaccccgctattcgaagagccgaagttgccggttgcgcagcctgcgcat
gatgccggtgacgtcgctgtttccagtgatgatggcgattccgatggtgtgtctcgcccg
actcgtcgccgtcatcgttcggcccggcccgacgatgatgttcgtgagattgccgatgag
cagtcgacgcgtactcgtcgccgccgcgcgatgcaggtcgaggatgagcgggatgaggat
cgtccgcgtcgccgtcgtcgttccgttggagatgcggatgagtatgacgagatgtcgcgt
cgtcgccgtcgcagcgctgtcgatgatttccgcgatgaggaatcgtttgaagaacgcgcg
cttgatgcggttgatatgttgccggaaggccatgaggtccgtcataatccgcgtccgatg
atgtcgctgctgtttcaggagccggttttgccgtctgctgcggattcccgtgacaggtcc
gatgacgatcgtgacgattcccgtgaatctcgcaatgatcgcaatatgcaggatcatgac
gatgcgcagggtgaggatcgtccgacccgtcgccgtcgccgtcgtaatcgtgacgttgct
gacgaagagcgttccgaagacaatcacagtgaacgtaacgagcgtgacaatcgtaatgat
gatgcggaaaacgatgaggaaggcggatctcgcaagtcccgtcgttcccgtcgtttgaac
gcgcaggagcgtcgagctgcggccgaggtcgagcagattgaagaggatttgatcctcgac
gatatcacgtacgcgcctatcgacgacgaaacacgtggcaatcgtggtgacgatgatgat
gacgagcagccgacgcgcacccgtcgtcgccgtcgtggccatggcagtcgtgaggaagct
gacgaacgacagcaggagaacgccgaaggtgagtctcgccgccgccgtgaggaggatgac
gaggaagagggcacggtgacccgtcgtcgtcgccgccgccgtggcggcgcgaaggccgag
gagcaggaagagatgctcgtacgccgttcccgcaagcagcagtacattgacgagatcacc
gatgtcgagggttcgactcgacttgaggccaagaagcagcgccgccgtgacaatcgccgc
gaacgcagccgtcaaagccagctcatggaacaggatttcctggctcgccgcgagcatgtg
gatcgcctgatggttgtgcgcgagcgcgaacgccacacgcagatttccgtgatcgaagac
aatgtgcttgtcgagcattacgtgtccgacattcaggaagtcgccaccgtgggcaacatc
tatcttggtcgcgtgcagaacgtgctgccgagcatggaggccgcgttcgtagacatcggt
caggcgcgcaacggcgtgctgtatgcgggtgaggtgaactgggattccgcacgtttggaa
ggccagcctcgccgcatcgaactcgcgttcaagtcgggagacccggtgctcgtgcaggtc
actaaggatccgatcgggcacaagggcgcacgactgacctcgcaggtcactcttgcgggc
cgtttcctggtgctcgtgccatccggtggcatgacgggcgtgagtcgtaagctcagcgag
cgcgaacgttcccgcctcaagaacatcgtgtcgaaggttgctccgaaagacatgggcgtg
atcattcgtaccgctgcggaaggcgcttccgaagaggcgattaccaaggaccttgaaagc
ttggtgcgccagtgggaacgtatcaccgccaagcgtgacgaattcctgcacggcaagcgt
ccgaagctgctgcaaggcgagccggacgtggcgatccgcgtggtgcgagacattttcaac
gacgacttctccaagatgatcgttgaaggtgaccgcgtgtacggccgtatcgaggaatac
ctcgacactatggctcccgacttgaaagacaagcttgaaaagtgggatccggccgaacat
gaaggcaaagacgtgttcgacaagtggcagatcgactcccagctgcgcaagggcatggag
cgtcaggtctacctgccgtcgggcggctcgatcgtgatcgaccgcaccgaagccatgacc
accatcgacgtgaacaccggccgtttcatcggccgcggcaagagccttgaggagacggtg
acccgctgcaacctcgaagcttccgaagagattgcacgtcagctgcgcctgcgtgacatc
ggcggcatggtgatgattgactttgtcgacatggtcatgccagccaaccgtgatctggtg
ctgcgcagactggtggaatgcctggcccgcgatcgtaccaagcatcaggtggctgaagtc
acctcgcttggcctggtgcagatgacgcgaaagcgcatcggacagggcttggtggaggcc
ttctccgaggaatgcccgacctgtaagggccgtggattcattcttcacgacgagccgacc
gtgtccgcggattatgacgatccgtacgccttgaagggcggcgacccgttcgtcaaaacc
aacaagcatggtcacggcacggacgtgcaggtgccgaaaggctcctcgccggacgtgaag
gccaaactcgcgcagatcgcggcggctgccgtggccgccaataatgcggaactgggtgag
gaagcatag
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