Bartonella clarridgeiae: BARCL_0740
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Entry
BARCL_0740 CDS
T01394
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcd
Bartonella clarridgeiae
Pathway
bcd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BARCL_0740 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcd03019
]
BARCL_0740 (rne)
03009 Ribosome biogenesis [BR:
bcd03009
]
BARCL_0740 (rne)
Enzymes [BR:
bcd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BARCL_0740 (rne)
Messenger RNA biogenesis [BR:
bcd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BARCL_0740 (rne)
Ribosome biogenesis [BR:
bcd03009
]
Prokaryotic type
rRNA processing factors
BARCL_0740 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CBI76421
UniProt:
E6YHT3
LinkDB
All DBs
Position
complement(822382..824796)
Genome browser
AA seq
804 aa
AA seq
DB search
MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFVE
YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINESYGDDPIEETIQNKKSLRKTK
KDKSNSFMATDIENDIISETIIADDAEEIPDFSNDDIEMVGAEDALEELPTYRRKQGCQY
KIQEVIKRRQILLIQVIKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQD
RKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWDTIRALTLKSTAPCLI
HEESNLIKRSIRDLYSKDINEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAH
NDIETQLDKMLHPQVSLKSGGYLVINQTEALVAIDVNSGRSTKEHSVEKTALQTNLEAAE
EIARQLRLRDLAGLIVIDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMS
RQRIRVSVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLLRNSQYNIIVRTSVATA
LYVLNHKRNILVNLETRFGLSINIEADDSIGTQHLAISKGSIAKGNSFTSTVIEDNDKNT
VLMTSKTTKDTTSVENNKRRRRKNNKIESNNDGILADAHKDNTQNDDDTRRRGRRRGRRG
GRRNQDNNYQFRVPYAEPIGDFAKQALEEIKAEYRQYYNIPAAEPVGFNKGTRGYKRHLI
STQQDEIIKTHVAIKSTKHNVKSSEPLKNKRSLVKDKNITTPKQEEFVEEKLVTKSNRKP
KIKAINEFANEVNEEISINKKNQR
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaaatgcttatcgatgcctctcatccagaagaaacacgtgttgtcgtcgtt
cacgataataaaattgaagaacttgactttgagtcagaacataaaaaacaacttaaaggg
aatatttatttagcgcgtattacgcgtatagaaccatcacttcaagccgcttttgttgag
tatggtggtaaccgtcatggctttttaacctttgcagaaattcaccctgattattatcaa
attcctgttgccgatcgtcttgctctccttgaggaagagaaggccgttattaacgaaagt
tatggggatgatcccattgaggaaacaatccaaaataaaaaaagcttaaggaaaacaaaa
aaagataaaagcaatagttttatggcaacggatattgaaaatgatatcatatctgaaaca
attatagctgatgatgccgaagaaatacctgatttttccaatgatgacatcgaaatggtt
ggagcagaagatgcacttgaagaattacctacctatcggcgtaaacaggggtgtcaatat
aaaattcaggaagtaattaaacgtcgtcaaattttattaatccaagtcatcaaagaggaa
cgtggtaataaaggtgcagcacttacgacttatttgtcactagccggtcgctattctgtt
ttaatgcccaatacagctcgggggggtggtatttcacggaagatcaccaatatacaagat
cgcaaacgtcttaaagaaattgtaaaagaattagcggttccaaaaggtatgggagttatt
ttacgaacagctggagcaaatagaacaaaagctgaaattaaacgtgattatgaatacctc
atgcggttatgggatactattcgcgccttgacacttaaatcaaccgctccttgtttaatt
catgaagaaagtaatcttataaagcgttctattcgtgatctttatagtaaagatattaat
gaaattcttgttgcaggtgatcaaggatatcgtgaagctaaagactttatgcgcatgctt
atgccaagtcacgcaaaagttgttcaaccctatcgtaatcctattcctatttttgcgcat
aatgatatcgaaactcagcttgataaaatgttgcatccgcaggttagtttaaaatctgga
ggctatcttgtcattaaccaaacagaagcactcgttgctattgatgtaaactctggtcgt
tctactaaagaacattctgttgaaaaaacagcattacaaaccaatcttgaagctgcagaa
gaaatagcgcgtcaattacgtttacgtgatctcgctggtttaattgtgattgatttcatt
gatatgctagaaacccgtaatattaagcttgtagaaaaaaaattgaaagattgtttaaag
aacgatcgcgctcgtattcaggttggtcatatttcacattttggccttatggaaatgagt
cgtcaacgtattcgtgtatctgttctagaaagcactacacaaccttgcccacattgcgct
ggaactggaaatatacgctctgaatcatcaatcgctttacatgttatgcgttcaattgaa
gagtatcttctccgcaactcacagtataatattattgtacgcacatccgtagcaacagca
ctttatgtactaaatcataaacgcaatattcttgttaatttagaaacacgttttgggctt
agtattaatattgaagcggacgatagtattggaacgcaacatcttgctatttctaaaggc
tcaatagcaaagggcaattcttttacttcgacggttatcgaagataatgataaaaacact
gtcttaatgacaagcaaaactactaaagatacaacatcagttgaaaataacaaacggcgt
cggcgtaaaaacaacaaaattgaatctaataacgatggcattcttgctgatgctcataaa
gataatactcaaaatgatgatgatactcgtcgtcgtggacgtcgtcgtggacgccgcgga
ggtcggcgtaatcaggataataattatcagtttcgtgtcccttatgcagaacctattggg
gattttgccaagcaagctttagaagaaattaaagcagaatatcgccaatattataatatt
ccagctgctgaaccagttgggtttaataaaggtactcgtggttataaaaggcacttaatc
agcacacaacaagatgaaattataaaaactcatgttgctattaaatctacaaagcataat
gtgaagtcttcagagcctttaaaaaataaacggagccttgtaaaggataaaaatataaca
acaccaaaacaagaagaatttgttgaagaaaaattagtcaccaaatctaatcgaaaacct
aaaataaaagcaataaatgaattcgcaaatgaagtgaatgaagagatttctataaacaaa
aaaaatcaacgctaa
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