Burkholderia cepacia DDS 7H-2: DM42_2972
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Entry
DM42_2972 CDS
T03302
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03410
Base excision repair
bced03430
Mismatch repair
bced03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DM42_2972 (recJ)
03430 Mismatch repair
DM42_2972 (recJ)
03440 Homologous recombination
DM42_2972 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_2972 (recJ)
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DM42_2972 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DM42_2972 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DM42_2972 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AIO49405
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All DBs
Position
1:complement(3210468..3212165)
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AA seq
565 aa
AA seq
DB search
MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPVDIETALARLVPPTELKGCADA
AVLLADAIADKRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
VELAAARQPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPG
CAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAGREARTASGFDLGFGLGPRLNAAGRLSDMSL
GIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLADVDPADACTITLFNPAW
HQGVIGIVAGRLKEKFHRPSFTFAHADDEGRRVKGSGRSIAGFHLRDALDLVSKREPDLI
VAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKEKHLKLQLARGRQRFNAIWFNHTEPLPASAL
VAYRLVADTWNGVTRVQLIVEHAAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccggatcgttacccgccccgtcgcgcccgccgacgccgaagcgcttgcgcgccac
ggtctgcaccccgtcctcgcgcgcctgtacgcgtcgcgcggcgtgcagtcgcccgtcgac
atcgagaccgcgctcgcgcgcctcgttccgcccaccgagctgaaaggctgcgccgatgcg
gcggtgctgctcgccgacgcgatcgccgacaagcggcgcctgctggtcgtcgccgactac
gactgcgacggcgcgaccgcctgcgcggtcgcggtgcgcggcctgcggatgttcggcgcg
cagatcgactacctggtgccgaaccgcttcgaatacggctacggcctcacgcccgagatc
gtcgaactcgcggccgcgcgccaacccgacctgctgatcaccgtcgacaacgggatcgcg
agcgtcgccggcgtcgaagccgcgaacgcgcgcggcatcgacgtgctcgtgaccgaccac
cacctgccgggcgacgcgctgcccgccgcgcgcgcgatcgtcaacccgaatcagcccggc
tgcgcgttcccgagcaagcacctcgccggcgtcggcgtaatgttctacgtgctgctcgcg
ctgcgcgccgagctgcgccgccgcggcgcgttcgcgagcaaggaagccgagccgcgcctc
gacggcctgctcgacctcgtcgcgctcggcaccgtcgccgacgtcgtgcggctcgacggc
aacaaccgcgtgctggtcgcgcaggggctgcagcgcatccgcaacggccgcatgcagccg
ggcatcgccgcgctgttccgcgccgccgggcgcgaagcgcgcaccgcgtcgggcttcgac
ctcggcttcggcctcggcccgcgcctgaacgccgccgggcggctatccgacatgtcgctc
ggcatcgaatgcctgatcaccgacgacatcggccgcgcgtgggatctcgcgcaacagctc
gacgtgatgaaccgcgagcgccgcgaaatcgaggccggcatgcagcagcaggcgctcgcc
gatctcgccgacgtcgatccggccgacgcatgcacgatcacgctgttcaatcccgcgtgg
caccagggcgtgatcggcatcgtcgccggccggctcaaggagaaattccaccgcccgtcg
ttcacgttcgcgcacgccgacgacgaaggccggcgggtcaaggggtcgggacggtcgatc
gccggcttccacctgcgcgacgcgctcgacctcgtgtcgaaacgcgaaccggacctgatc
gtcgcgttcggcggccacgcgatggcggccggcctcacgctcgacaccgacaacgtgccg
cgcttcgcggccgcgttcgaggccgtcgcgcgcgaatggctgtccgacgacgcgctcgcc
cgcgtgatcgagaccgacggcgaactcgaggacgcgtacttcacgccgcagttcgtcggc
ctgctcgacgaagccgtgtgggggcaagggtttccggccccgcttttctcgggcgaattc
gacgtcgtgtcgcagtcgctcgtgaaggaaaagcacctgaagctgcagctggcgcgcggc
cgtcagcgcttcaacgcgatctggttcaaccacaccgagccgctgccggcgagcgcgctg
gtcgcgtaccggctcgtcgccgatacgtggaacggcgtcacgcgcgtgcagctgatcgtc
gaacacgcggccggctga
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