Burkholderia cepacia DDS 7H-2: DM42_6719
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Entry
DM42_6719 CDS
T03302
Name
(GenBank) eukaryotic DNA topoisomerase I, catalytic core family protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bced03032
]
DM42_6719
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_6719
Enzymes [BR:
bced01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DM42_6719
DNA replication proteins [BR:
bced03032
]
Prokaryotic type
DNA Topoisomerases
DM42_6719
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DM42_6719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AIO43781
LinkDB
All DBs
Position
3:complement(362777..363805)
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AA seq
342 aa
AA seq
DB search
MKQPASSTAAALRHVDDRQPGYTRRRLRNGFAYYAQDGTRIRDAAEIARIDALAIPPAYT
DVWICADPLGHLQATGRDARGRKQYRYHPQWRATRDANKYARMAAFARALPRIRARVTRD
LALPGMPRDKVVATIVRLLDTTLARIGNAEYARENGSYGLTTLRKRHLKIQPGQVRLRFT
GKSGIEHDVTVDDARVARIVRRCAELPGHELFQYVDDDGVRHPVGSSDVNDYLREAGGAD
FTAKDYRTWAGSVHALGLLRRVEHRGVTHARKQIVETVRAVADLLRNTPAVCRRCYIHPV
VLDAFESGALATLAVRRSPRGLRADEAAFVALLVSASRRAAR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcccgcttcgagcacggccgcggcgctgcgccacgtcgacgaccgccagccc
ggctacacgcgccgccgcctgcgcaacggcttcgcgtattacgcgcaagacggcacgcgg
attcgcgatgccgcggaaatcgcccgcatcgacgcgctggcgattccccctgcctacacc
gacgtgtggatctgcgcggacccgctcggccacctgcaggcgacgggccgcgacgcgcgc
ggccgcaagcagtatcgctaccacccgcagtggcgggcgacccgcgacgcgaacaagtac
gcacgaatggccgcgttcgcgcgggcgctgccgcgcatccgcgcgcgcgtcacgcgcgac
ctggcgttgccgggcatgccgcgcgacaaggtcgtcgcgacgatcgtccgcttgctcgac
acgacgctcgcgcggatcggcaacgcggaatacgcacgcgaaaacggctcgtacgggctg
acgacgctgcgcaagcgccatttgaagatccagcccggccaggtgcggctgcgcttcacc
ggcaagagcgggatcgaacacgacgtgacggtcgacgatgcgcgggtcgcgcggatcgtg
cggcgctgcgcggaactgcccggtcacgagctgttccagtatgtggacgacgacggcgtg
cgccatccggtcgggtcgtccgacgtgaacgattacctgcgcgaagccggcggcgcggat
ttcaccgcgaaggattaccggacgtgggccggcagcgtgcacgcgctcgggttgctgcgg
cgcgtggagcaccgcggcgtcacgcatgcccgcaagcagatcgtcgaaacggtgcgcgcg
gtggcggacctgctgcgcaacacgccggccgtgtgccggcgctgctacatccatccggtc
gtgctcgacgcgttcgagtcgggcgcgctcgccacgctggcggtccggcgctcgccgcgc
ggcctgcgcgcggatgaagcggcgttcgtcgcgttgctggtgtccgcgagccggcgcgcg
gcgagatga
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