Brucella ceti TE28753-12: V568_200771
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Entry
V568_200771 CDS
T02935
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bcee
Brucella ceti TE28753-12
Pathway
bcee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bcee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V568_200771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcee03400
]
V568_200771
Enzymes [BR:
bcee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V568_200771
DNA repair and recombination proteins [BR:
bcee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V568_200771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
AHB03346
LinkDB
All DBs
Position
2:712068..715580
Genome browser
AA seq
1170 aa
AA seq
DB search
MPVFSKLGLKPGAIANKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQRIAD
LEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPAVILTT
ANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTSTRKEFVLQPMSEITLSSDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLETVFDHAGPMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEEAAEAAGLRIDLT
PFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEG
SLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAAT
KKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
VPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQMAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAA
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttcagcaaactcggtctcaagcccggcgcgatcgcgaataaggggcgccat
atcgtcattgacggtgttgcggacggttttgaggcgttctgccttgcgcgtctggtggaa
gagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtgttgggtttcgtttcgcccgatctgccggtgctgcacctgcccgcctgg
gattgcctgccttatgaccgcgtgtcgccaggggcggatgctgcagcgcgcagacttgcg
gcgctcagcgcgctttgcgcactgaagaaagcaccgcatccagccgtcattctcaccacg
gccaatgccgtgctgcaaaaattgccgccgcaggccgcacttggcgaacaggtgatctca
gcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgcaacggc
tttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggcattctc
gatctttatgcgccgggagcggaagaaccgctgcggcttgattttttcggcgatacgctg
gaaacgatccgtgccttcgatcccgcctcccagcgcaccaccagcacccgaaaggaattc
gtgcttcagccgatgagcgaaatcacgctctcgtccgacatgataagccggtttcgcaag
aattatgtggccatgttcggcgcgccgcagcgtgacgatgcgctttatcaggccatcagc
gaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaatctggag
acagttttcgaccatgccgggccaatgccggtcgtgttcgaccatctggtgcatgaggcg
ctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcaggcggag
ggcaaagaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatgctctat
cttacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgaccttacg
ccattcggcgcgccggaggtttccggccggaccattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgccgcaaccgacgtgaacctgtttgaagccgtggtgaaa
catattgcagacctgcgcgcctccggcaaaaaggttctggttgccgcctggaccgaaggt
tcgctcgaccggctctgtcaggttctggacgaacacgggcttgaaaaaatagagaccgtc
gataggctttccaccgtcaaggccctgtcgcgcgacaaggtgacggcggcggtgctggcg
gtcgaaagcggcttcgatgcgggcgatctggtggtcgtggcggagcaggatattctgggc
gacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcggaagtc
gcctcgctgacggctggcgatatcgtcgtccatgtcgatcacggcattgggcgctttatc
ggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccattatgcg
ggcgatgaccgcctgtttctgccggttgagaatatcgagcttctgtcgcgctatggctcg
gaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgcaaggca
aaactcaagaaacggcttctggaaattgccggccatctgatccagattgccgccgaacgc
cagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaatttgccgcg
cgctttccctatgatgagactgacgaccagttgacggcaatcgaggccgtggcggatgat
cttgcgcaaggcaagccgatggatcgcctcatctgcggcgatgtcgggttcggcaagacg
gaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggcagtggtc
gtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgctttcacggc
ctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcgaaggagctggccgccacc
aaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgcttttgggc
agctccatcaagttcaagaatctcggccttctcattatcgatgaggagcagcatttcggt
gtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgaccctttcg
gccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgtgaactttcgctc
atcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattcgatccg
ctcgtgatccgcgaaacccttttgcgtgaacgctatcgcggcggccagagcttctatgtc
gtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtgccggaa
ctgaaagtggccgtggcccatggccagatggcgccgggtgtgctggatgacatcatgaat
gccttctatgacgggcagtatgatgtgcttctttccacaaccatcgtggaatcgggcctc
gatattccaaccgccaacaccatgatcgtgcatcgtgccgatatgttcgggctggcgcaa
ctctatcagttgcgcggccgcgtgggccgctccaagcagcgcgctttcgcgctgttcacg
ctcccggcgggcaagatgctgacgcagatggccgaacgccgtctgaaagtgctgcaatcg
ctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgcggcgca
ggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgagctttac
cagcaaatgcttgaagaagcggttgcgacgctgaagggctccggcgaagtggaagacagc
cagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctatgtgccc
gacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccgcaggat
atcgatgcctttggtgcggaactcatcgaccgtttcggcccgatgcccgacgaagtgcag
catcttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgagaaactc
gatgccgggccgaagggcgtggttatccagttccgccacgcgaccttcaacaatccggtc
ggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggaccagagc
atcgtcttcatccgcgattggccgacaccggaaaagcgcctcaacggctccgccgtcatc
atgacacagcttgcaaagattgcggcggcctga
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