Burkholderia cepacia ATCC 25416: APZ15_05640
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Entry
APZ15_05640 CDS
T04772
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bcep
Burkholderia cepacia ATCC 25416
Brite
KEGG Orthology (KO) [BR:
bcep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bcep03016
]
APZ15_05640
Enzymes [BR:
bcep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
APZ15_05640
Transfer RNA biogenesis [BR:
bcep03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
APZ15_05640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
PRRSV_Env
Motif
Other DBs
NCBI-ProteinID:
ALK17324
UniProt:
A0A806V378
LinkDB
All DBs
Position
1:1239182..1239760
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AA seq
192 aa
AA seq
DB search
MNGDRLRAFVALMPDAASRDALHALPVTRGARRTQSAQLHMTLAFIGAIERDRCEALAAH
LPALAAAHALPLLPVERIAWWPSLPRARLIVAELAADPACLALNAGLVALLGELGVPADR
RPFRPHVTLARLPRDAVGQPAHGGAPGRAVAVRVEALTLFESRLSHEGVSHRPVASAPIA
WADGEADGPAPQ
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgaccggctccgtgcgttcgtcgcgctgatgcccgatgcggcctcgcgcgac
gcgctgcacgcgttgccggtcacccgcggagcgcggcgcacgcagtccgcgcaactgcac
atgacgctcgcgttcatcggcgcgatcgaacgggaccgatgcgaggcgctggccgcgcat
ctgcccgcgctcgcggccgcccatgcgctgccgttgctgccggtcgagcggatcgcgtgg
tggccgagcctgccgcgcgcgaggctgatcgtcgcggagctcgcggccgatcctgcctgt
ctggcgctgaatgccgggctggtcgcgctgctgggcgaactcggcgtgccggccgaccgg
cggccgttccggccgcacgtgacgctcgcgcggctgccgcgcgatgcggtcggccagcct
gcgcacggcggtgcgcccgggcgggcggtcgcggtgcgtgtcgaagcgctgacgttgttc
gaaagccggctgtcgcacgagggcgtgtcgcatcggccggtcgcgtccgcgccgatcgcg
tgggcggacggcgaggcggacggtccggcgccgcagtga
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