Candidatus Baumannia cicadellinicola B-GSS: AB162_389
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Entry
AB162_389 CDS
T04544
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bcig
Candidatus Baumannia cicadellinicola B-GSS
Pathway
bcig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AB162_389 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcig03019
]
AB162_389 (rne)
03009 Ribosome biogenesis [BR:
bcig03009
]
AB162_389 (rne)
Enzymes [BR:
bcig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AB162_389 (rne)
Messenger RNA biogenesis [BR:
bcig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AB162_389 (rne)
Ribosome biogenesis [BR:
bcig03009
]
Prokaryotic type
rRNA processing factors
AB162_389 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
BrxL_N
Motif
Other DBs
NCBI-ProteinID:
AKZ65980
UniProt:
A0A0K2BKX3
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All DBs
Position
399519..401807
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AA seq
762 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLAIESWGHEQKKANIYKGIITRIEQSLEAAFVDH
GADRHGFLPFKEISSEYFPPNYSSNNRLNIKDVLHEGQEIIVQVDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGEYRNELKEVLSLLELPEGMGLIVRTAGIGKSAEAL
QWDLSFRLKHWQAIKKAADSRPAPFLIYQESNVIVRSFRDYLRPDIGEILIDNPKFLNLA
KEHITLLGRPDFTSKLKLYSGEIPLFSYYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARSIRGLDIEETAFNTNIEAAEEIARQLRLRDLGGLIVIDFIDMTQVRNQREVE
NCLRESVRKDRARIQIGRISRFGLLELSRQRISSSLGESSHHLCPRCGGTGTIRDNESLS
LSILRIIEEETLKANTHEVHAIVPVPIASYLLNEKRAAVNAIEKRKGGVRAIIVPNDQMH
TPNYVVIRIRKGEEATTLSYLLPQLYSTEKMQHQADKIDDINAERKRDEQPAMTNTNVIS
PDNRIKIAKTPVIYASMIKLFFRLIAGLKSLVIASNKLDKCYPQQYSMLIKTESEVSSNN
KEELISTSKKFISTICNKQQYLANSQSTINKKEEYTEQKIQVLPKILDDSYYHHADTKNI
VKNMSQLRQFNLIDKKIRVIKCSPTNIIVSKQTASVNSEAYYCNNYKKTEPIRSRSLRYL
RVSGQRRRRYDRYELTRSSSHAAHSSNSNRQDKVIKLQDTSI
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaatgccactcaacaagaagagttacgcgtagccttagtagat
ggccagaaattgtatgacctagctattgaaagctggggacatgaacagaaaaaagcaaat
atatacaagggtatcattacccgtattgaacaaagtcttgaagcagcttttgtagatcat
ggtgctgatcgtcatggttttctgccttttaaagaaatttctagtgaatattttcctcct
aactattctagtaataataggttaaacattaaagacgtactgcatgaaggtcaagaaatt
attgtacaagtagataaagaggaaagaggtaataaaggcgcggcacttactacatttatt
agtctagctggaagctatcttgttttgatgcctaataaccctcgtgcaggaggaatttca
agaagaattgagggtgaatatcgtaatgaactaaaggaggttttatcattactagaacta
ccagaaggtatgggactaatagttcgtactgcaggtattggtaaatcagcagaagcatta
caatgggatctatctttccgtcttaaacactggcaggcaattaaaaaagcagctgatagt
cgtccagcaccatttttgatttatcaggaaagcaatgtaatagtacgttcgttccgtgat
tatctcaggccagatattggtgaaattctgatagataaccctaaatttttaaatttagct
aaagaacatattacattacttggtcgtcctgactttactagtaaactaaagctatacagt
ggtgaaattcctttgtttagttactaccagatagaatcacagattgaatccgctttccaa
cgtgaagtacgtttaccttctggcggatcaatagtcattgatactacggaggcgttaact
gccatagatattaactcagctcgttcaatccgtggcttagatattgaagaaacagccttt
aatactaacatagaagcagctgaagaaattgctcgtcagttacgtttgcgagacctagga
ggtttaatagtaatagactttattgatatgacgcaagtacgtaatcaacgtgaagtagaa
aattgtttgcgtgaatcagtacgtaaagatcgtgctcgtattcagataggacgcatatca
cgttttggtttattggaactttctcgccaacgtattagttcatcattaggtgagtcaagc
catcatttatgtcctagatgcggtggtactggtaccatacgtgataatgaatcattatca
ctttctatactacgtatcatagaagaagaaacactaaaagctaatactcatgaagtacat
gctatcgtaccagtacctattgcttcttatttgcttaatgaaaagcgtgccgcagttaat
gcgatagagaagcgtaaaggtggagtacgtgcaattattgttcctaatgatcaaatgcac
actccaaattatgtggttatcaggatacgtaaaggtgaagaagcaactacactcagctat
ttattaccgcaactatacagtacggaaaagatgcagcatcaagcagataaaattgatgat
atcaacgctgaaagaaaacgtgatgagcaacctgctatgactaatactaatgtaattagt
ccagataatagaatcaaaatagcaaaaacaccagttatttatgcgtcaatgattaaatta
ttttttagattaattgccgggttaaaatctttagtcatagcttcaaataaattagataaa
tgttatccacaacaatatagtatgctaattaaaacagagtcggaagtgtcgtctaataat
aaagaagaactcattagtacgtcaaaaaaatttatctcaaccatttgcaataagcagcag
tatttggcaaatagccaatctacaataaacaaaaaagaagaatacactgaacaaaaaatt
caagtattacctaaaatacttgatgatagttattatcatcacgctgatactaaaaatata
gtaaaaaatatgtcacagctgagacaatttaacttgatagataaaaaaataagagttatt
aagtgcagtccaacaaacatcattgtgtctaagcaaactgcttctgtaaattcagaggca
tattattgcaataattataagaaaacagaaccaattagatcacgtagtttgcgttattta
agagttagcggacaacgccgtcgtcgttatgatcgttatgagcttaccagatcatcatca
catgctgctcatagtagtaattcaaataggcaagataaagtaattaaactacaagataca
tccatttaa
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