Burkholderia orbicola: Bcenmc03_6073
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Entry
Bcenmc03_6073 CDS
T00669
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bcm
Burkholderia orbicola
Pathway
bcm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bcm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bcenmc03_6073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bcm03400
]
Bcenmc03_6073
Enzymes [BR:
bcm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bcenmc03_6073
DNA repair and recombination proteins [BR:
bcm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bcenmc03_6073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACA95194
UniProt:
B1KAE7
LinkDB
All DBs
Position
3:52224..55007
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AA seq
927 aa
AA seq
DB search
MAGKLDPYRRKRHFGATPEPEGAHGKRRTKTDTQAASKPQAKRPAARARHPLRFVIQEHH
ARRLHYDLRLELDGTLKSWAVPKGPSFDPQVKRLAVHVEDHPLEYASFEGEIPAGHYGAG
SVVVWDEGTWTPDGGVAQAREGYRAGKLTFRLDGEKLHGGWALVRSGRQERRQEQWLLIK
ERDDDARSADEFDVVGERPGSVHDGATHGATRKRAARRGRSTDADGDAHDAQHPSHASQR
PTDPSQVEGAVRAPLPERVAPQLATLVDAPPTQGGWCYELKFDGYRILARIAGKGARRRV
TLMTREGRDWTMKLRAQRDALAALDLDDAWLDGEAVVLGENGLPDFQALQNAFGTDRSDA
ITFFVFDLPYLDGYDLRDAPLTERRALLEPLLANSDPARVRFSPDLGEDVASLIASACDT
GLEGLIGKRADSRYRAGRSSAWIKLKCRRRQEFVIGGFTEPSGSRHGFGALLLGVHEPAP
AGKRRRGPGPLRYVGRVGTGFDARMLDRLAAILSKHERDTMPFDAPPRERTRTRVHWVEP
TLVAECEFAEWTGDGIVRQAAFIALREDKPAAQIVREMPKHTETEVTMDQRPTPHDDTRK
RASRAARETGDRKPSARSRAAARADGDASGPDTLGRVRITHPERVLDPQSGTRKLDLARY
WQWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLDPGHGPLLSI
DSVDALLGAAQMGTVELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIDAAQLVRGLLD
ELGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAGTLPDRFTATMGPRHRR
GKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPATTGGAQWTIDTLHERLDTL
KRDPWEGYAKTRQRITAAMRARLGADA
NT seq
2784 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaagcgccatttcggcgcgacgcccgagccc
gaaggggcgcacggcaagcgtcgcacgaagacggatacgcaagcggcctcgaagccgcag
gcgaagcggcccgccgcgcgcgcacgccatccgctgcgcttcgtgatccaggagcaccac
gcgcgccggctgcactacgacttgcggctcgaactcgacggcacgctgaaatcgtgggcc
gtgccgaaaggcccgagcttcgatccgcaggtgaagcggctcgcggtgcacgtcgaggac
catccgctcgaatatgcgtcgttcgaaggcgagattccggccgggcattacggtgcgggc
tcggtcgtcgtgtgggacgaaggcacgtggacgcccgacggcggcgtcgcgcaggcgcgc
gaaggctaccgggccggcaagctgacgttccggctcgacggcgagaagctgcacggcggc
tgggcgctggtgcgcagcgggcggcaggaaaggcgtcaggagcagtggctgctgatcaag
gagcgcgacgacgacgcgcgcagcgccgatgaattcgacgtcgtcggcgagcggccgggg
agcgtgcatgacggcgcgacccacggcgcgacacgcaagcgcgcggcgcggcgcggccga
tcgaccgacgcggacggcgatgcacatgacgcgcaacacccaagccacgcaagccagcgc
cccaccgatccgtcgcaggtcgaaggcgcggtgcgcgcgccgctgcccgagcgcgtcgcg
ccgcaactcgcgacgctggtcgatgcaccgccgacgcaaggtggctggtgctacgaactg
aagttcgacggttaccgcatcctggcgcgcatcgcaggcaagggcgcacgccggcgcgtc
acgctgatgacgcgcgaaggccgggactggaccatgaagctgcgcgcgcagcgcgacgcg
ctcgcggcgctcgatctcgacgacgcatggctcgacggcgaggccgtcgtgctcggcgaa
aacggcctgcccgatttccaggcgctgcagaacgcgttcggtacggaccgctcggacgcg
atcaccttcttcgtgttcgatctgccttatctcgacggctacgacctgcgcgacgcgccg
ctcaccgagcgtcgcgcgctgctcgaaccgctgctcgcgaacagcgacccggcgcgcgtg
cgcttttcgcccgatctcggcgaggacgtcgcgtcgctgatcgcgagcgcgtgcgacacc
ggcctcgaagggctgatcggcaagcgcgcggactcgcgctatcgcgccgggcggtcgtcc
gcgtggatcaagctcaaatgccggcgccggcaggagttcgtgatcggcggctttacggag
ccgtcgggcagccggcacggcttcggcgcgctgctgctcggcgtgcacgagccggcgccg
gccggcaagcggcggcgcgggcccgggccgctgcgctacgtcggccgcgtcggcaccggc
ttcgatgcgcgcatgctcgaccgtctcgccgcgatcctgagcaaacacgagcgcgacacg
atgccgttcgatgcgccgccgcgcgaacgcacgcgcacccgcgtgcactgggtcgagccg
acgctcgtcgccgaatgcgaattcgcggaatggaccggcgacgggatcgtgcggcaggcc
gcgttcatcgcgctgcgcgaggacaagccggcggcgcagatcgtccgcgagatgcccaaa
catacggaaacggaggtgacgatggatcaacgcccgaccccgcacgacgacacacgcaag
cgcgcatcgcgtgccgctcgtgaaaccggcgatcgcaagccgtctgcacggtctcgcgca
gccgcccgcgccgacggcgatgcgtccggccccgacacgctcggccgcgtgcgcatcacg
catcccgagcgcgtgctcgacccgcaaagcggcacgcgcaagctcgatctcgcgcggtac
tggcaatgggtcgcgccgtggctgctgcccgacctgaaaggccgtcccgtgtcactcgtg
cgcgcccccggcgacatcgccggcgaactgttcttccagaagcacgcggagcgtcgcgag
atcccgttcgtcacgcagcacgaagggctcgacccgggccatgggccgctgctgtcgatc
gacagcgtcgacgcgctgctcggcgccgcgcagatgggcacggtcgagctgcacacgtgg
aacgcgcatgcgtcgaacatcgagcggcccgaccgcatcgtattcgacctcgatcccgac
ccggcgctgccgtggcgcacgatgatcgacgccgcgcagctcgtgcgcgggctgctcgac
gagctcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtg
ccgctcacgcggcatgcgggctgggacgacgtgaaggacttttcgcgcgcggtcgcgcag
cacgtcgccggcacgctgcccgaccgcttcaccgcgacgatgggaccgcgccaccggcgc
ggcaagatcttcgtcgactacctgcgcaacgggcgcggcgcgagcacgatcgctgcgtat
tcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgctcgactgggacgaggtgccc
gcgacgacgggcggcgcgcaatggacgatcgacacgctgcacgaacggctggacacgctg
aagcgcgacccgtgggaaggctatgcgaagacgcgccagcgcatcaccgcggcgatgcgg
gcacggctcggcgccgacgcgtga
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