KEGG   Burkholderia cenocepacia MC0-3: Bcenmc03_6073Help
Entry
Bcenmc03_6073     CDS       T00669                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bcm  Burkholderia cenocepacia MC0-3
Pathway
bcm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bcm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Bcenmc03_6073
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bcm03400]
    Bcenmc03_6073
Enzymes [BR:bcm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Bcenmc03_6073
DNA repair and recombination proteins [BR:bcm03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Bcenmc03_6073
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: ACA95194
UniProt: B1KAE7
LinkDB All DBs
Position
3:52224..55007
Genome map
AA seq 927 aa AA seqDB search
MAGKLDPYRRKRHFGATPEPEGAHGKRRTKTDTQAASKPQAKRPAARARHPLRFVIQEHH
ARRLHYDLRLELDGTLKSWAVPKGPSFDPQVKRLAVHVEDHPLEYASFEGEIPAGHYGAG
SVVVWDEGTWTPDGGVAQAREGYRAGKLTFRLDGEKLHGGWALVRSGRQERRQEQWLLIK
ERDDDARSADEFDVVGERPGSVHDGATHGATRKRAARRGRSTDADGDAHDAQHPSHASQR
PTDPSQVEGAVRAPLPERVAPQLATLVDAPPTQGGWCYELKFDGYRILARIAGKGARRRV
TLMTREGRDWTMKLRAQRDALAALDLDDAWLDGEAVVLGENGLPDFQALQNAFGTDRSDA
ITFFVFDLPYLDGYDLRDAPLTERRALLEPLLANSDPARVRFSPDLGEDVASLIASACDT
GLEGLIGKRADSRYRAGRSSAWIKLKCRRRQEFVIGGFTEPSGSRHGFGALLLGVHEPAP
AGKRRRGPGPLRYVGRVGTGFDARMLDRLAAILSKHERDTMPFDAPPRERTRTRVHWVEP
TLVAECEFAEWTGDGIVRQAAFIALREDKPAAQIVREMPKHTETEVTMDQRPTPHDDTRK
RASRAARETGDRKPSARSRAAARADGDASGPDTLGRVRITHPERVLDPQSGTRKLDLARY
WQWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLDPGHGPLLSI
DSVDALLGAAQMGTVELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIDAAQLVRGLLD
ELGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAGTLPDRFTATMGPRHRR
GKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPATTGGAQWTIDTLHERLDTL
KRDPWEGYAKTRQRITAAMRARLGADA
NT seq 2784 nt NT seq  +upstreamnt  +downstreamnt
atggccggcaagctcgatccgtatcgccgcaagcgccatttcggcgcgacgcccgagccc
gaaggggcgcacggcaagcgtcgcacgaagacggatacgcaagcggcctcgaagccgcag
gcgaagcggcccgccgcgcgcgcacgccatccgctgcgcttcgtgatccaggagcaccac
gcgcgccggctgcactacgacttgcggctcgaactcgacggcacgctgaaatcgtgggcc
gtgccgaaaggcccgagcttcgatccgcaggtgaagcggctcgcggtgcacgtcgaggac
catccgctcgaatatgcgtcgttcgaaggcgagattccggccgggcattacggtgcgggc
tcggtcgtcgtgtgggacgaaggcacgtggacgcccgacggcggcgtcgcgcaggcgcgc
gaaggctaccgggccggcaagctgacgttccggctcgacggcgagaagctgcacggcggc
tgggcgctggtgcgcagcgggcggcaggaaaggcgtcaggagcagtggctgctgatcaag
gagcgcgacgacgacgcgcgcagcgccgatgaattcgacgtcgtcggcgagcggccgggg
agcgtgcatgacggcgcgacccacggcgcgacacgcaagcgcgcggcgcggcgcggccga
tcgaccgacgcggacggcgatgcacatgacgcgcaacacccaagccacgcaagccagcgc
cccaccgatccgtcgcaggtcgaaggcgcggtgcgcgcgccgctgcccgagcgcgtcgcg
ccgcaactcgcgacgctggtcgatgcaccgccgacgcaaggtggctggtgctacgaactg
aagttcgacggttaccgcatcctggcgcgcatcgcaggcaagggcgcacgccggcgcgtc
acgctgatgacgcgcgaaggccgggactggaccatgaagctgcgcgcgcagcgcgacgcg
ctcgcggcgctcgatctcgacgacgcatggctcgacggcgaggccgtcgtgctcggcgaa
aacggcctgcccgatttccaggcgctgcagaacgcgttcggtacggaccgctcggacgcg
atcaccttcttcgtgttcgatctgccttatctcgacggctacgacctgcgcgacgcgccg
ctcaccgagcgtcgcgcgctgctcgaaccgctgctcgcgaacagcgacccggcgcgcgtg
cgcttttcgcccgatctcggcgaggacgtcgcgtcgctgatcgcgagcgcgtgcgacacc
ggcctcgaagggctgatcggcaagcgcgcggactcgcgctatcgcgccgggcggtcgtcc
gcgtggatcaagctcaaatgccggcgccggcaggagttcgtgatcggcggctttacggag
ccgtcgggcagccggcacggcttcggcgcgctgctgctcggcgtgcacgagccggcgccg
gccggcaagcggcggcgcgggcccgggccgctgcgctacgtcggccgcgtcggcaccggc
ttcgatgcgcgcatgctcgaccgtctcgccgcgatcctgagcaaacacgagcgcgacacg
atgccgttcgatgcgccgccgcgcgaacgcacgcgcacccgcgtgcactgggtcgagccg
acgctcgtcgccgaatgcgaattcgcggaatggaccggcgacgggatcgtgcggcaggcc
gcgttcatcgcgctgcgcgaggacaagccggcggcgcagatcgtccgcgagatgcccaaa
catacggaaacggaggtgacgatggatcaacgcccgaccccgcacgacgacacacgcaag
cgcgcatcgcgtgccgctcgtgaaaccggcgatcgcaagccgtctgcacggtctcgcgca
gccgcccgcgccgacggcgatgcgtccggccccgacacgctcggccgcgtgcgcatcacg
catcccgagcgcgtgctcgacccgcaaagcggcacgcgcaagctcgatctcgcgcggtac
tggcaatgggtcgcgccgtggctgctgcccgacctgaaaggccgtcccgtgtcactcgtg
cgcgcccccggcgacatcgccggcgaactgttcttccagaagcacgcggagcgtcgcgag
atcccgttcgtcacgcagcacgaagggctcgacccgggccatgggccgctgctgtcgatc
gacagcgtcgacgcgctgctcggcgccgcgcagatgggcacggtcgagctgcacacgtgg
aacgcgcatgcgtcgaacatcgagcggcccgaccgcatcgtattcgacctcgatcccgac
ccggcgctgccgtggcgcacgatgatcgacgccgcgcagctcgtgcgcgggctgctcgac
gagctcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtg
ccgctcacgcggcatgcgggctgggacgacgtgaaggacttttcgcgcgcggtcgcgcag
cacgtcgccggcacgctgcccgaccgcttcaccgcgacgatgggaccgcgccaccggcgc
ggcaagatcttcgtcgactacctgcgcaacgggcgcggcgcgagcacgatcgctgcgtat
tcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgctcgactgggacgaggtgccc
gcgacgacgggcggcgcgcaatggacgatcgacacgctgcacgaacggctggacacgctg
aagcgcgacccgtgggaaggctatgcgaagacgcgccagcgcatcaccgcggcgatgcgg
gcacggctcggcgccgacgcgtga

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